RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC25A14O95258 325 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 SIX3O95343 332 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 JUNP05412 331 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ITGB7P26010 798 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 MTHFRP42898 656 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 HK3P52790 923 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 DCDC1P59894 354 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 HERVK_113P63132 956 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ZBTB16Q05516 673 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PRKAA1Q13131 559 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PFKFB4Q16877 469 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ITPRIPL2Q3MIP1 535 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 SLC9B1Q4ZJI4 515 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CFAP157Q5JU67 520 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 SPDYAQ5MJ70 313 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 HENMT1Q5T8I9 393 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ZDHHC20Q5W0Z9 365 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 EPGNQ6UW88 154 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CHRDL2Q6WN34 429 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PTGR2Q8N8N7 351 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 SMRP1Q8NCR6 262 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 STAG3L4Q8TBR4 150 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 OR8D1Q8WZ84 308 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CNDP1Q96KN2 507 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ERVK-6Q9BXR3 956 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 FAM83DQ9H4H8 585 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 STN1Q9H668 368 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 FADS2P1A8MWK0 482 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 DNAJC8O75937 253 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 TPBGLP0DKB5 382 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 XPAP23025 273 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 SERPINB5P36952 375 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 GRIA2P42262 883 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 NSG1P42857 185 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 KHDC1Q4VXA5 237 aaKnown RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 GPRC6AQ5T6X5 926 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 FAM91A1Q658Y4 838 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 UGT3A1Q6NUS8 523 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 EZH1Q92800 747 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 PDLIM5Q96HC4 596 aaKnown RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 COPS8Q99627 209 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 SPATA16Q9BXB7 569 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 PRSS16Q9NQE7 514 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 ARL8BQ9NVJ2 186 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 NFKBIL1Q9UBC1 381 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 RNF112Q9ULX5 631 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 CAPN14A8MX76 684 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 AREL1O15033 823 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 SMIM24O75264 130 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 TRIM16O95361 564 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 TSPAN8P19075 237 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 HTR4Q13639 388 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 ACSBG2Q5FVE4 666 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 ASRGL1Q7L266 308 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 TREML1Q86YW5 311 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 INPP5DQ92835 1189 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 RILPQ96NA2 401 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 WRAP53Q9BUR4 548 aaKnown RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 RIOK2Q9BVS4 552 aaKnown RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 SMOXQ9NWM0 555 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 EPS15L1Q9UBC2 864 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 TSR3Q9UJK0 312 aaKnown RBP13.62□□□□□ -0.23
PTPRF-202ENST00000372405 CAPN7Q9Y6W3 813 aa13.62□□□□□ -0.23
PTPRF-202ENST00000372405 F5P12259 2224 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 COL4A2P08572 1712 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SUPT3HB4E1H0 165 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 PPP6CO00743 305 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 HDAC3O15379 428 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 KLK8O60259 260 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 DIAPH2O60879 1101 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 MTX2O75431 263 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SUPT3HO75486 399 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 EPHX1P07099 455 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SERPINA6P08185 405 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 ELFN1P0C7U0 828 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 ALDH18A1P54886 795 aaKnown RBP13.61□□□□□ -0.23
PTPRF-202ENST00000372405 ENPP2Q13822 863 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 FBXO48Q5FWF7 155 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SH2D4BQ5SQS7 431 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 ERAP2Q6P179 960 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SBSNQ6UWP8 590 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 MMAAQ8IVH4 418 aaKnown RBP13.61□□□□□ -0.23
PTPRF-202ENST00000372405 PELI3Q8N2H9 469 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 DTX3LQ8TDB6 740 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 UCMAQ8WVF2 138 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SUSD6Q92537 303 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 ULK4Q96C45 1275 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SLC7A6OSQ96CW6 309 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-202ENST00000372405 NSUN5Q96P11 429 aaKnown RBP13.61□□□□□ -0.23
PTPRF-202ENST00000372405 OR52B2Q96RD2 323 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 SUN2Q9UH99 717 aa13.61□□□□□ -0.23
PTPRF-202ENST00000372405 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-202ENST00000372405 TRIOBPQ9H2D6 2365 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ANHXE9PGG2 379 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 SGTAO43765 313 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 SUPT7LO94864 414 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ADRB3P13945 408 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 GFAPP14136 432 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 NFKBIAP25963 317 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 GALK1P51570 392 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms