RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FAM8A1Q9UBU6 413 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 USP22Q9UPT9 525 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 BACE2Q9Y5Z0 518 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 OAS3Q9Y6K5 1087 aaKnown RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 PRSS21Q9Y6M0 314 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ANKRD36A6QL64 1941 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 SYCE1LA8MT33 242 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 NME4O00746 187 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 FFAR3O14843 346 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 GPR42O15529 346 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 FKTNO75072 461 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ABLIM3O94929 683 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ACRP10323 421 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 MTHFD1P11586 935 aaKnown RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 NCK1P16333 377 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ATP6V1B2P21281 511 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 EPHB3P54753 998 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TGFBIQ15582 683 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 NAIF1Q69YI7 327 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 CHST9Q7L1S5 443 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TSPAN33Q86UF1 283 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 SERPINA9Q86WD7 417 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 DHFR2Q86XF0 187 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 NKAPQ8N5F7 415 aaKnown RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 FNDC5Q8NAU1 212 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ADAMTS19Q8TE59 1207 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 MYO19Q96H55 970 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TMEM74Q96NL1 305 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 COQ10BQ9H8M1 238 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 PCTPQ9UKL6 214 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 A0A1B0GTW7 788 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SAC3D1A6NKF1 404 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 TRIM24O15164 1050 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 OR6B1O95007 311 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CTSOP43234 321 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 HSPA7P48741 367 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ATP6V0D1P61421 351 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 C6orf10Q5SRN2 563 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ACBD5Q5T8D3 534 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ZFP1Q6P2D0 407 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 MBOAT1Q6ZNC8 495 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PHYKPLQ8IUZ5 450 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ST13P4Q8IZP2 240 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PCYOX1LQ8NBM8 494 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ZNF558Q96NG5 402 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 EGFL8Q99944 293 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 NSUN3Q9H649 340 aaKnown RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 IL17CQ9P0M4 197 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PDP2Q9P2J9 529 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 INSL5Q9Y5Q6 135 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 MYOFQ9NZM1 2061 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PRSS51A0A1B0GVH4 220 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 TEX28O15482 410 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SNUPNO95149 360 aaKnown RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 NFYCQ13952 458 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SAMD4BQ5PRF9 694 aaKnown RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 IL27RAQ6UWB1 636 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 MYO1HQ8N1T3 1032 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 METTL6Q8TCB7 284 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CLPBQ9H078 707 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ZDHHC7Q9NXF8 308 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 A0A1W2PRU2 124 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PFDN6O15212 129 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SYNCRIPO60506 623 aaKnown RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SLC25A14O95258 325 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 STAMBPO95630 424 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CHEK2O96017 543 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CAPN1P07384 714 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 RPS17P08708 135 aaKnown RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 HOXB8P17481 243 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CD70P32970 193 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 GGT5P36269 586 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 CHN2P52757 468 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ERVPABLB-1P60509 514 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 XIAPP98170 497 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 PAGE3Q5JUK9 113 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 LETMD1Q6P1Q0 360 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 KLHDC10Q6PID8 442 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 RFLNAQ6ZTI6 216 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 GPRIN3Q6ZVF9 776 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SATL1Q86VE3 508 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 TMEM102Q8N9M5 508 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SKA2Q8WVK7 121 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SLCO4A1Q96BD0 722 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 TCF12Q99081 682 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 SLC29A1Q99808 456 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 ZFYVE1Q9HBF4 777 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 POPDC3Q9HBV1 291 aa10.23□□□□□ -0.77
LIMA1-201ENST00000341247 KRT87PA6NCN2 255 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 PRMT5O14744 637 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CYBBP04839 570 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 FGF4P08620 206 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 BCL2L1Q07817 233 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 SLC15A3Q8IY34 581 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CMTM8Q8IZV2 173 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 HJURPQ8NCD3 748 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 SPDYE1Q8NFV5 336 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 OR56A4Q8NGH8 313 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 DLG3Q92796 817 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 LATS2Q9NRM7 1088 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms