RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PCDHGA7Q9Y5G6 932 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 FBP2O00757 339 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 FTH1P02794 183 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 ALDOCP09972 364 aaKnown RBP11.84□□□□□ -0.51
USP1-201ENST00000339950 SEMA3AQ14563 771 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 SF1Q15637 639 aaKnown RBP11.84□□□□□ -0.51
USP1-201ENST00000339950 C6orf183Q5T699 404 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 FAM180BQ6P0A1 224 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 UGT2A3Q6UWM9 527 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 TMEM207Q6UWW9 146 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 PIANPQ8IYJ0 282 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 ATG16L2Q8NAA4 619 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 OR56A4Q8NGH8 313 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 ZFRQ96KR1 1074 aaKnown RBP11.84□□□□□ -0.51
USP1-201ENST00000339950 MRPS26Q9BYN8 205 aaKnown RBP11.84□□□□□ -0.51
USP1-201ENST00000339950 CXorf21Q9HAI6 301 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 GTF2IRD1Q9UHL9 959 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 POLG2Q9UHN1 485 aa11.84□□□□□ -0.51
USP1-201ENST00000339950 SLC25A14O95258 325 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 S1PR4O95977 384 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 IL1BP01584 269 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ACAP2Q15057 778 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 GTDC1Q4AE62 458 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 CYP27C1Q4G0S4 372 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 PAGE3Q5JUK9 113 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 MICU2Q8IYU8 434 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 C2CD4AQ8NCU7 369 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 LRRC58Q96CX6 371 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 MS4A4AQ96JQ5 239 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 TRIM62Q9BVG3 475 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 NAA50Q9GZZ1 169 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 CLK4Q9HAZ1 481 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 IGSF5Q9NSI5 407 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 LMCD1Q9NZU5 365 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 hCG_2039718K7EN88 272 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 HTRA2O43464 458 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 RPP40O75818 363 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 CST1P01037 141 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 CYBBP04839 570 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 PABPC4LP0CB38 370 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 G6PDP11413 515 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 PKMP14618 531 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 HNF4AP41235 474 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 MAGEA6P43360 314 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 POLR2JP52435 117 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 PFKPQ01813 784 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 UBE3AQ05086 875 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 CCDC85BQ15834 202 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 MAPKAPK3Q16644 382 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 BRMS1LQ5PSV4 323 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ZNF678Q5SXM1 525 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ANKRD34AQ69YU3 496 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 DENND5AQ6IQ26 1287 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 RANBP10Q6VN20 620 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 PRR23BQ6ZRT6 265 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 SLC15A3Q8IY34 581 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 METTL25Q8N6Q8 603 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 DLG3Q92796 817 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ELOVL6Q9H5J4 265 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 EXOSC4Q9NPD3 245 aaKnown RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 SH3BP1Q9Y3L3 701 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ESRRBO95718 433 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ZNF865P0CJ78 1059 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 ZNF182P17025 639 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 IMPDH1P20839 514 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 MZF1P28698 734 aaPredicted RBP11.83□□□□□ -0.52
USP1-201ENST00000339950 HSPA13P48723 471 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 RHDQ02161 417 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 PRKG2Q13237 762 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 CMPK2Q5EBM0 449 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 RNF19BQ6ZMZ0 732 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ADCK1Q86TW2 530 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ZDHHC13Q8IUH4 622 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 RNF175Q8N4F7 328 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 ZNF555Q8NEP9 628 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 OR52J3Q8NH60 311 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 TEX37Q96LM6 180 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 APOLD1Q96LR9 279 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 SLC30A3Q99726 388 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 FANCEQ9HB96 536 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 TRPM5Q9NZQ8 1165 aa11.83□□□□□ -0.52
USP1-201ENST00000339950 B4GALT3O60512 393 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 H6PDO95479 791 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 DLGAP3O95886 979 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 GBAP04062 536 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 RPL9P32969 192 aaKnown RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 OR4D2P58180 307 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ANKRD26P1Q6NSI1 321 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 LYSMD3Q7Z3D4 306 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 IFNLR1Q8IU57 520 aaPredicted RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 SELENOMQ8WWX9 145 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ASB9Q96DX5 294 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 BTN2A3PQ96KV6 586 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 CCDC28BQ9BUN5 200 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 SMOXQ9NWM0 555 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ADGRE2Q9UHX3 823 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 SSC5DA1L4H1 1573 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 TBC1D4O60343 1298 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 RHOQP17081 205 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 LPOP22079 712 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms