RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SYCE1LA8MT33 242 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 TMEM233B4DJY2 109 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 HDAC3O15379 428 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ATP5HO75947 161 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SNUPNO95149 360 aaKnown RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SIX3O95343 332 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SERPINA6P08185 405 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ELFN1P0C7U0 828 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 T-ENOLP0DO92 83 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 IL12RB1P42701 662 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 MTHFRP42898 656 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 HK2P52789 917 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ITPRIPL2Q3MIP1 535 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SLC9B1Q4ZJI4 515 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 EPGNQ6UW88 154 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 FBXO39Q8N4B4 442 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SUSD6Q92537 303 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 INPP5DQ92835 1189 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 EML4Q9HC35 981 aaKnown RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ARL8BQ9NVJ2 186 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 NCF1BA6NI72 391 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 NCF1CA8MVU1 366 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 NEMP1O14524 444 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 EPHX1P07099 455 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 NCF1P14598 390 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 TSPAN8P19075 237 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ITGB7P26010 798 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 AKT1P31749 480 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 EIF2DP41214 584 aaKnown RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 MAGEA9P43362 315 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 DCDC1P59894 354 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 B4GALNT1Q00973 533 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 PDCD2Q16342 344 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 UNC50Q53HI1 259 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 GPRC6AQ5T6X5 926 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 EGFLAMQ63HQ2 1017 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 KIF2BQ8N4N8 673 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 TMIEQ8NEW7 156 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ARRDC3Q96B67 414 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ACOX2Q99424 681 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 WRAP53Q9BUR4 548 aaKnown RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 NUF2Q9BZD4 464 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 CACNA2D2Q9NY47 1150 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 TMPRSS11EQ9UL52 423 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 PPM1HQ9ULR3 514 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 FIS1Q9Y3D6 152 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ANKRD12Q6UB98 2062 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 LRRK1Q38SD2 2015 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 LRRC14BA6NHZ5 514 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 SLCO1B7G3V0H7 640 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 GRID2O43424 1007 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 SOX9P48436 509 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 UBAP2LQ14157 1087 aaKnown RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ACOX1Q15067 660 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 FBXL19Q6PCT2 694 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 LIPIQ6XZB0 460 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 CUZD1Q86UP6 607 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 ZBTB2Q8N680 514 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 THAP10Q9P2Z0 257 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-202ENST00000339872 VTI1BQ9UEU0 232 aa13.23□□□□□ -0.29
HMGB1-202ENST00000339872 IGLV3-16A0A075B6K0 115 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 GOLGA8QA0A0J9YX86 632 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 GOLGA8OA6NCC3 632 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 GOLGA8NF8WBI6 632 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PLK4O00444 970 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 APODP05090 189 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 JUNP05412 331 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 LTBRP36941 435 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 GRIA2P42262 883 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 RGS4P49798 205 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 CDH13P55290 713 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 FBXO48Q5FWF7 155 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 FAM91A1Q658Y4 838 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 FRA10AC1Q70Z53 315 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 ASRGL1Q7L266 308 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 DET1Q7L5Y6 550 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 GPSM1Q86YR5 675 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PPM1EQ8WY54 764 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PDLIM5Q96HC4 596 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PPP1R16AQ96I34 528 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 FAM129BQ96TA1 746 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 TRMOQ9BU70 441 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 RIOK2Q9BVS4 552 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 WDR55Q9H6Y2 383 aaPredicted RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 TCF7L2Q9NQB0 619 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 RAD18Q9NS91 495 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 SPATS2LQ9NUQ6 558 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 SMOXQ9NWM0 555 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 UTP6Q9NYH9 597 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 HCN2Q9UL51 889 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 CFAP73A6NFT4 308 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 E9PBE3 544 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 ARNTLO00327 626 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 SPINT1O43278 529 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 KLHL41O60662 606 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 MTX2O75431 263 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 DGKAP23743 735 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 EEF1DP29692 281 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 KCNJ2P63252 427 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms