RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 RASGEF1AQ8N9B8 481 aa13.82□□□□□ -0.2
LIMS1-201ENST00000332345 PPHLN1Q8NEY8 458 aaKnown RBP13.82□□□□□ -0.2
LIMS1-201ENST00000332345 CCDC74AQ96AQ1 378 aa13.82□□□□□ -0.2
LIMS1-201ENST00000332345 TIMM29Q9BSF4 260 aa13.82□□□□□ -0.2
LIMS1-201ENST00000332345 IL22Q9GZX6 179 aa13.82□□□□□ -0.2
LIMS1-201ENST00000332345 KCNK6Q9Y257 313 aa13.82□□□□□ -0.2
LIMS1-201ENST00000332345 ZNF106Q9H2Y7 1883 aaKnown RBP13.82□□□□□ -0.2
LIMS1-201ENST00000332345 FAM149AA5PLN7 773 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 KLHL33A6NCF5 533 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CFAP99D6REC4 459 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 GPR39O43194 453 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 SNX2O60749 519 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TCEA3O75764 348 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CASQ1P31415 396 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 SESN2P58004 480 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CACNG1Q06432 222 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TARDBPQ13148 414 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TSTD2Q5T7W7 516 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CDCP2Q5VXM1 449 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 LRRC8BQ6P9F7 803 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 IYDQ6PHW0 289 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TAS2R42Q7RTR8 314 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 AMZ2Q86W34 360 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CREG2Q8IUH2 290 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 ZNF547Q8IVP9 402 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 NAGSQ8N159 534 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 NXPE1Q8N323 547 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 DCBLD1Q8N8Z6 715 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 PEX13Q92968 403 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 CAPZA3Q96KX2 299 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 RUNDC3BQ96NL0 473 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 DEPDC7Q96QD5 511 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TTC1Q99614 292 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 COPS8Q99627 209 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 OSGEPL1Q9H4B0 414 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 FAM96AQ9H5X1 160 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TBC1D29Q9UFV1 150 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 SLC23A2Q9UGH3 650 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 RNF215Q9Y6U7 377 aa13.81□□□□□ -0.2
LIMS1-201ENST00000332345 TRBV23OR9-2A0A075B6M9 112 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 KIR2DS5A0A0G2JLQ3 304 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 A0A0G2JNG1 304 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 KIR2DS3K7RE56 304 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 CCL22O00626 93 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 POP7O75817 140 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 IDSP22304 550 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 CA5AP35218 305 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 MAGEA6P43360 314 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 GPR3P46089 330 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 MAZP56270 477 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 ETF1P62495 437 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SPIDRQ14159 915 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 KIR2DS5Q14953 304 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 PPP1R7Q15435 360 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 FNBP1LQ5T0N5 605 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 LYPLAL1Q5VWZ2 237 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 RBM44Q6ZP01 1051 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SLC9B2Q86UD5 537 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 CCNJLQ8IV13 435 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SFTPA2Q8IWL1 248 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SFRP1Q8N474 314 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 Q8N9G6 341 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 AVL9Q8NBF6 648 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 HDAC10Q969S8 669 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SH3KBP1Q96B97 665 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 GRAMD1AQ96CP6 724 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 SGF29Q96ES7 293 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 GFM1Q96RP9 751 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 LRRN3Q9H3W5 708 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 STN1Q9H668 368 aaKnown RBP13.8□□□□□ -0.2
LIMS1-201ENST00000332345 CHRAC1Q9NRG0 131 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 ZDHHC3Q9NYG2 299 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 PCYOX1Q9UHG3 505 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 NEU2Q9Y3R4 380 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 TCAF1Q9Y4C2 921 aa13.8□□□□□ -0.2
LIMS1-201ENST00000332345 TRBV5-4A0A0C4DH59 114 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 CCDC78A2IDD5 438 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 CCDC162PA2VCL2 907 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 OR2AG2A6NM03 316 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 NTN3O00634 580 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-201ENST00000332345 F3P13726 295 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 ATP1B2P14415 290 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-201ENST00000332345 ACRV1P26436 265 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 ALDH4A1P30038 563 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 PPARGP37231 505 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-201ENST00000332345 TERF1P54274 439 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 CLDN6P56747 220 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 PRAMEP78395 509 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 CCL7P80098 99 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 KCNJ11Q14654 390 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 PLA2G4EQ3MJ16 856 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 ARMC3Q5W041 872 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 WASH2PQ6VEQ5 465 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 DET1Q7L5Y6 550 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 C11orf96Q7Z7L8 435 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 SERPINA9Q86WD7 417 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 MARCH9Q86YJ5 346 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 MCUQ8NE86 351 aa13.79□□□□□ -0.2
LIMS1-201ENST00000332345 OR13J1Q8NGT2 312 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms