RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SLC5A9Q2M3M2 681 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 PAN3Q58A45 887 aaKnown RBP7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 TFDP3Q5H9I0 405 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 COL5A1-AS1Q5SY13 56 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 UGT3A1Q6NUS8 523 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP20A1Q6UW02 462 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 SPESP1Q6UW49 350 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 THNSL1Q8IYQ7 743 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 FBXO39Q8N4B4 442 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF248Q8NDW4 579 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 BHLHE22Q8NFJ8 381 aaPredicted RBP7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 OR13C5Q8NGS8 318 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 OR13C2Q8NGS9 318 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF564Q8TBZ8 553 aaPredicted RBP7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 CNOT9Q92600 299 aaKnown RBP7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 HAS2Q92819 552 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 WDR41Q9HAD4 459 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ADAM22Q9P0K1 906 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 CRLS1Q9UJA2 301 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ERBINQ96RT1 1412 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 PI4KAP2A4QPH2 592 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ANXA2P2A6NMY6 339 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 K7ERQ8 282 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 NKRFO15226 690 aaKnown RBP eCLIP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ANXA2P07355 339 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PRR29P0C7W0 189 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SPP1P10451 314 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RARGP13631 454 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RPL17P18621 184 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MAOBP27338 520 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CHRNA4P43681 627 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MAPK14Q16539 360 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 STEAP4Q687X5 459 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF621Q6ZSS3 439 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 STRA8Q7Z7C7 330 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC30A8Q8IWU4 369 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PI4KAP1Q8N8J0 262 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF420Q8TAQ5 688 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MAPK15Q8TD08 544 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RASD2Q96D21 266 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLITRK1Q96PX8 696 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 EBNA1BP2Q99848 306 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CABLES2Q9BTV7 478 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SPATA5L1Q9BVQ7 753 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MRPL13Q9BYD1 178 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 UCK2Q9BZX2 261 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB6BQ9NRW1 208 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MAN2C1Q9NTJ4 1040 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC9A2Q9UBY0 812 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TLR6Q9Y2C9 796 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 C3orf70A6NLC5 250 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PCCBP05166 539 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CHRM5P08912 532 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PIM1P11309 404 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FDFT1P37268 417 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 EMP1P54849 157 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FXYD6P3P58550 94 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MLLT1Q03111 559 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TCIRG1Q13488 830 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 HES1Q14469 280 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PPA1Q15181 289 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SPATS1Q496A3 300 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SAMD4BQ5PRF9 694 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PPP1R26Q5T8A7 1209 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GALNT7Q86SF2 657 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF573Q86YE8 665 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GPR65Q8IYL9 337 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM130Q8N3G9 435 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PLBD2Q8NHP8 589 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 BORCS8Q96FH0 119 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 OSGEPL1Q9H4B0 414 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CERS4Q9HA82 394 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ZSWIM5Q9P217 1185 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB22AQ9UL26 194 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 COL4A3BPQ9Y5P4 624 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 KIF21AQ7Z4S6 1674 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 WDR17Q8IZU2 1322 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GXYLT2A0PJZ3 443 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CCDC188H7C350 402 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 POLRMTO00411 1230 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TOR1BO14657 336 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TM9SF1O15321 606 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PGLSO95336 258 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CNOT4O95628 575 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 LTFP02788 710 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ALAS1P13196 640 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FBLP22087 321 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RPS10P46783 165 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GRIN2CQ14957 1233 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC10A1Q14973 349 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 EML3Q32P44 896 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MPPE1Q53F39 396 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM160B1Q5W0V3 765 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FSTL4Q6MZW2 842 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 OGFOD2Q6N063 350 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 LRRC34Q8IZ02 419 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RBMXL3Q8N7X1 1067 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 C8orf48Q96LL4 319 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM121BQ9BXQ6 578 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLAMF7Q9NQ25 335 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms