RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RBL1P28749 1068 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 HMGCLP35914 325 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 SPAM1P38567 509 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 CLCNKAP51800 687 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 MPP3Q13368 585 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 SLC1A5Q15758 541 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 ATP13A5Q4VNC0 1218 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 FAM151BQ6UXP7 276 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 DTX1Q86Y01 620 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 TRAPPC5Q8IUR0 188 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 TTC30BQ8N4P2 665 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 SGF29Q96ES7 293 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 VPS35Q96QK1 796 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 PANX2Q96RD6 677 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 TRABDQ9H4I3 376 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 SCHIP1Q9P0W5 487 aaPredicted RBP19.24■□□□□ 0.67
LIME1-201ENST00000309546 TMPRSS11EQ9UL52 423 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 EPN1Q9Y6I3 576 aaPredicted RBP19.24■□□□□ 0.67
LIME1-201ENST00000309546 ATMQ13315 3056 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 RCCD1A6NED2 376 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 GPR39O43194 453 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 VIPP01282 170 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 EPOP01588 193 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 HLA-DPA1P20036 260 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 CTNNA1P35221 906 aaKnown RBP19.23■□□□□ 0.67
LIME1-201ENST00000309546 ATP1A2P50993 1020 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 ARSDP51689 593 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 UBE2IP63279 158 aaKnown RBP19.23■□□□□ 0.67
LIME1-201ENST00000309546 ANKS6Q68DC2 871 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 WDR74Q6RFH5 385 aaPredicted RBP19.23■□□□□ 0.67
LIME1-201ENST00000309546 ZNF547Q8IVP9 402 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 ZSCAN1Q8NBB4 408 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 MRFAP1L1Q96HT8 127 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 TTC25Q96NG3 672 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 TIMM29Q9BSF4 260 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 DDA1Q9BW61 102 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 RBSNQ9H1K0 784 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 HACD3Q9P035 362 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 TRIM10Q9UDY6 481 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 TRHDEQ9UKU6 1024 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 PCDHGA4Q9Y5G9 962 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 PCDHGA3Q9Y5H0 932 aa19.23■□□□□ 0.67
LIME1-201ENST00000309546 LILRA5A6NI73 299 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 B4E171 279 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 CTNNA2P26232 953 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 RPL10P27635 214 aaKnown RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 TSPAN7P41732 249 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 DRG2P55039 364 aaKnown RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 RAB15P59190 212 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 OTUD4Q01804 1114 aaKnown RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 TMEM115Q12893 351 aaPredicted RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 XRCC4Q13426 336 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 CHRNA6Q15825 494 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 DCAF12Q5T6F0 453 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 ITPRIPL1Q6GPH6 555 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 ZNF605Q86T29 641 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 TMTC1Q8IUR5 882 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 ACTL9Q8TC94 416 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 CTRCQ99895 268 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 FAM118BQ9BPY3 351 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 FERMT1Q9BQL6 677 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 FICDQ9BVA6 458 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 GBA3Q9H227 469 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 EPB41L1Q9H4G0 881 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 IL26Q9NPH9 171 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 IL17CQ9P0M4 197 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 PDP2Q9P2J9 529 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 PKP3Q9Y446 797 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 PCDHA3Q9Y5H8 950 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 DUSP10Q9Y6W6 482 aa19.22■□□□□ 0.67
LIME1-201ENST00000309546 ZNF106Q9H2Y7 1883 aaKnown RBP19.22■□□□□ 0.67
LIME1-201ENST00000309546 GLYATL1P3A0A0U1RQE8 302 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 PJA2O43164 708 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 AGTP01019 485 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 TYRP1P17643 537 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 VCLP18206 1134 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 WT1P19544 449 aaPredicted RBP19.21■□□□□ 0.67
LIME1-201ENST00000309546 SLC19A1P41440 591 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 GEMP55040 296 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 GFERP55789 205 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 COPS2P61201 443 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 ZDHHC20Q5W0Z9 365 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 RAD9BQ6WBX8 426 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 CDKL3Q8IVW4 592 aaPredicted RBP19.21■□□□□ 0.67
LIME1-201ENST00000309546 IL22RA1Q8N6P7 574 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 ACRBPQ8NEB7 543 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 ARHGAP9Q9BRR9 750 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 ASPSCR1Q9BZE9 553 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 OSBPL8Q9BZF1 889 aa19.21■□□□□ 0.67
LIME1-201ENST00000309546 ZCCHC2Q9C0B9 1178 aaKnown RBP19.21■□□□□ 0.67
LIME1-201ENST00000309546 ZNF624Q9P2J8 865 aaPredicted RBP19.21■□□□□ 0.67
LIME1-201ENST00000309546 UGT1A9O60656 530 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 ANXA9O76027 345 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 XRCC1P18887 633 aaPredicted RBP19.2■□□□□ 0.66
LIME1-201ENST00000309546 UGT1A6P19224 532 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 IDSP22304 550 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 UGT1A1P22309 533 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 UGT1A4P22310 534 aa19.2■□□□□ 0.66
LIME1-201ENST00000309546 UGT1A3P35503 534 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms