RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF471Q9BX82 626 aaPredicted RBP13.77□□□□□ -0.2
CSPG4-201ENST00000308508 MAGI3Q5TCQ9 1506 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 H7C2Y5 167 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 LAMP2P13473 410 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 TMEM17Q86X19 198 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 LGR4Q9BXB1 951 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 CCSER2Q9H7U1 834 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 TCF7L1Q9HCS4 588 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 KCNIP3Q9Y2W7 256 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 REXO2Q9Y3B8 237 aaKnown RBP13.77□□□□□ -0.21
CSPG4-201ENST00000308508 ABCA9Q8IUA7 1624 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 NPEPPSL1A6NEC2 478 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 SHOX2O60902 331 aaPredicted RBP13.77□□□□□ -0.21
CSPG4-201ENST00000308508 CD2P06729 351 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 CCR10P46092 362 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 PDX1P52945 283 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 AIF1P55008 147 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 SEMA5AQ13591 1074 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 TEAD4Q15561 434 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 C9orf64Q5T6V5 341 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 IQSEC1Q6DN90 963 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 FAM83AQ86UY5 434 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 SLC38A4Q969I6 547 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF347Q96SE7 839 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 ABCG8Q9H221 673 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 MTMR10Q9NXD2 777 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 SLC35G4P0C7Q5 338 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 CD247P20963 164 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 SEC23AQ15436 765 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 ECHDC2Q86YB7 292 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 REPS2Q8NFH8 660 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 TREM1Q9NP99 234 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 GOT1P17174 413 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 PRR23CQ6ZRP0 262 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 RANBP3LQ86VV4 465 aaPredicted RBP13.77□□□□□ -0.21
CSPG4-201ENST00000308508 UBE2J2Q8N2K1 259 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 LRTOMTQ8WZ04 291 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 MAFIPQ8WZ33 124 aa13.77□□□□□ -0.21
CSPG4-201ENST00000308508 NRG1Q02297 640 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ATXN7L2Q5T6C5 722 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 C11orf16Q9NQ32 467 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TMX2Q9Y320 296 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 GPSM3Q9Y4H4 160 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ALKQ9UM73 1620 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 KCNU1A8MYU2 1149 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 NUAK1O60285 661 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 LINGO3P0C6S8 592 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 STOMP27105 288 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 RASGEF1BQ0VAM2 473 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZYG11AQ6WRX3 759 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF69Q9UC07 566 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MAFFQ9ULX9 164 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MADDQ8WXG6 1647 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 SLC22A2O15244 555 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 PGLSO95336 258 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 CXCR3P49682 368 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 RGS8P57771 180 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 CDKL4Q5MAI5 379 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZDHHC20Q5W0Z9 365 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF517Q6ZMY9 492 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZBTB8BQ8NAP8 495 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 HJURPQ8NCD3 748 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TAS2R1Q9NYW7 299 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ANKRD12Q6UB98 2062 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MYH7P12883 1935 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 CPNE3O75131 537 aaKnown RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF311Q5JNZ3 666 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 FAAH2Q6GMR7 532 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 RAB12Q6IQ22 244 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 DNASE1L2Q92874 299 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ART5Q96L15 291 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 L7N2F9 121 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TULP2O00295 520 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TFPIP10646 304 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 SSR2P43308 183 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MAPK12P53778 367 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 VAMP2P63027 116 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MAB21L1Q13394 359 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TIGD6Q17RP2 521 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 GXYLT1Q4G148 440 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 C6orf183Q5T699 404 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 CAPN13Q6MZZ7 669 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 CLIP4Q8N3C7 705 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 FITM2Q8N6M3 262 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ZFP3Q96NJ6 502 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 FEM1AQ9BSK4 669 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 UNC13BO14795 1591 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 GNAO1P09471 354 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 MC4RP32245 332 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 ARL3P36405 182 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 UBE2R2Q712K3 238 aaPredicted RBP13.76□□□□□ -0.21
CSPG4-201ENST00000308508 SLC30A8Q8IWU4 369 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 OR52J3Q8NH60 311 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 EBF3Q9H4W6 596 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 TMEM134Q9H6X4 195 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 SNTG1Q9NSN8 517 aa13.76□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A9O60656 530 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 NME6O75414 186 aaPredicted RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A6P19224 532 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms