RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 H3BM21 787 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 CYB561D2O14569 222 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 UGT2B17O75795 530 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 SMNDC1O75940 238 aaKnown RBP eCLIP3.99□□□□□ -1.77
USH2A-201ENST00000307340 PDX1P52945 283 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 SKIV2LQ15477 1246 aaKnown RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 SLC1A5Q15758 541 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 UBE2SQ16763 222 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 KLHDC10Q6PID8 442 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 PHYKPLQ8IUZ5 450 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 INO80EQ8NBZ0 244 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 AKAP1Q92667 903 aaKnown RBP eCLIP3.99□□□□□ -1.77
USH2A-201ENST00000307340 CCDC3Q9BQI4 270 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 UNKQ9C0B0 810 aaKnown RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 SPASTQ9UBP0 616 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 TDRKHQ9Y2W6 561 aaKnown RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 UBIAD1Q9Y5Z9 338 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 COL22A1Q8NFW1 1626 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 CACNA2D1P54289 1103 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 CNTN2Q02246 1040 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 THAP5Q7Z6K1 395 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 PIGWQ7Z7B1 504 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 SLC47A2Q86VL8 602 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 TMEM161BQ8NDZ6 487 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 GHRLQ9UBU3 117 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 VWA7Q9Y334 891 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 CENPBD1B2RD01 187 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 RFXANKO14593 260 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 EIF2DP41214 584 aaKnown RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 RORCP51449 518 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 HERVK_113P62684 666 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 MFSD13AQ14CX5 517 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 SLC24A5Q71RS6 500 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 OSTF1Q92882 214 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 EEF2KMTQ96G04 330 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 MAPKAP1Q9BPZ7 522 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 HGH1Q9BTY7 390 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 ANKRA2Q9H9E1 313 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 CCDC167Q9P0B6 97 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 COPS7AQ9UBW8 275 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 GPC6Q9Y625 555 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 TRAV19A0A0A6YYK7 116 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 SLC15A5A6NIM6 579 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 HGFP14210 728 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 YWHAQP27348 245 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 OR1G1P47890 313 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 ACOT2P49753 483 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 ACTBP60709 375 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 ACTG1P63261 375 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 NRG1Q02297 640 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 USP41Q3LFD5 358 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 MPP7Q5T2T1 576 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 OVOS1Q6IE37 1185 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 CES5AQ6NT32 575 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 USP30Q70CQ3 517 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 KAT2AQ92830 837 aa3.99□□□□□ -1.77
USH2A-201ENST00000307340 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.99□□□□□ -1.77
USH2A-201ENST00000307340 TEX33O43247 280 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 FYNP06241 537 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 TFEBP19484 476 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 MYBPC1Q00872 1141 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 KCNC4Q03721 635 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 QPRTQ15274 297 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 LRRC41Q15345 812 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 HKDC1Q2TB90 917 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ESRP1Q6NXG1 681 aaKnown RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 ABHD13Q7L211 337 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 CPSF7Q8N684 471 aaKnown RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 EPS8L3Q8TE67 593 aaKnown RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 C1orf54Q8WWF1 131 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SLAMF9Q96A28 289 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 APBA2Q99767 749 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 STARD7Q9NQZ5 370 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SDHAF3Q9NRP4 125 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 CYB5R1Q9UHQ9 305 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 BCS1LQ9Y276 419 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 MATN3O15232 486 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SLC16A5O15375 505 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 DARSP14868 501 aaKnown RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 TYMPP19971 482 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ERVK-8P63133 956 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ADAM8P78325 824 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 CCDC142Q17RM4 750 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 CNSTQ6PJW8 725 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 AGMOQ6ZNB7 445 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ZSWIM9Q86XI8 627 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SLC15A3Q8IY34 581 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 HCAR2Q8TDS4 363 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SYTL5Q8TDW5 730 aaPredicted RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 GEMIN6Q8WXD5 167 aaKnown RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 EPYCQ99645 322 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 COMMD4Q9H0A8 199 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 PRKAG3Q9UGI9 489 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ACSL4O60488 711 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 ACVR2AP27037 513 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 CLCN4P51793 760 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 RALGDSQ12967 914 aa3.98□□□□□ -1.77
USH2A-201ENST00000307340 SHROOM1Q2M3G4 852 aaPredicted RBP3.98□□□□□ -1.77
USH2A-201ENST00000307340 ARMC8Q8IUR7 673 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms