RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CXCR4P61073 352 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PAFAH1B3Q15102 231 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 CACHD1Q5VU97 1274 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 OGFOD2Q6N063 350 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SATL1Q86VE3 508 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 GLB1L3Q8NCI6 653 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 CD300LFQ8TDQ1 290 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 NSMCE2Q96MF7 247 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 NDUFAF4Q9P032 175 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 LIMD1Q9UGP4 676 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 TNPO3Q9Y5L0 923 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 CEPT1Q9Y6K0 416 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 DDTLA6NHG4 134 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 WRBO00258 174 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SOAT2O75908 522 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SERPINA1P01009 418 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 C2P06681 752 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SPARCP09486 303 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 LTA4HP09960 611 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 DPEP1P16444 411 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 NELFEP18615 380 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 MAPK1P28482 360 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 S100GP29377 79 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SCAPQ12770 1279 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 NFIAQ12857 509 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MRNIPQ6NTE8 343 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ADHFE1Q8IWW8 467 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 COLGALT1Q8NBJ5 622 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CYP2W1Q8TAV3 490 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MSANTD3Q96H12 275 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FICDQ9BVA6 458 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FARSBQ9NSD9 589 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 RAPGEFL1Q9UHV5 662 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MKLN1Q9UL63 735 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SLC39A10Q9ULF5 831 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CNTNAP2Q9UHC6 1331 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SLC33A1O00400 549 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 EEF2KO00418 725 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 GMFGO60234 142 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ARHGEF15O94989 841 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MYCP01106 439 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 BMP1P13497 986 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CYP3A5P20815 502 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MERTKQ12866 999 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FASTKD3Q14CZ7 662 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 PCLAFQ15004 111 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CRY1Q16526 586 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FBXO43Q4G163 708 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TFAP2DQ7Z6R9 452 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CDK20Q8IZL9 346 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ELMOD1Q8N336 334 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 BLOC1S5Q8TDH9 187 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FOPNLQ96NB1 174 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 LPIN3Q9BQK8 851 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ASPNQ9BXN1 380 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TRIT1Q9H3H1 467 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 FZD8Q9H461 694 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 GBA2Q9HCG7 927 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 RAVER2Q9HCJ3 691 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 MAN1C1Q9NR34 630 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 IRAK3Q9Y616 596 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 NUMBLQ9Y6R0 609 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 GABRDO14764 452 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 DFNA5O60443 496 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 VNN1O95497 513 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 DBIP07108 87 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 ZSCAN5DPP0CG00 497 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 JUNDP17535 347 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MATKP42679 507 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ARL4DP49703 201 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TEKQ02763 1124 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 DNASE1L3Q13609 305 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 BMPR2Q13873 1038 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SV2CQ496J9 727 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 AGKQ53H12 422 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SCML4Q8N228 414 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TNFAIP8L1Q8WVP5 186 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FAM120BQ96EK7 910 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 HPDLQ96IR7 371 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ZNF471Q9BX82 626 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 NECTIN3Q9NQS3 549 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SLC38A7Q9NVC3 462 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MAU2Q9Y6X3 613 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MYH2Q9UKX2 1941 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MN1Q10571 1320 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 DOT1LQ8TEK3 1739 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TMEM221A6NGB7 291 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 PLK4O00444 970 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 HTRA2O43464 458 aaPredicted RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 OR5F1O95221 314 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 WEE1P30291 646 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 RPS9P46781 194 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 TLR1Q15399 786 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CAND1Q86VP6 1230 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 ZNF540Q8NDQ6 660 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 OR52E4Q8NGH9 312 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TFAP2CQ92754 450 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FATE1Q969F0 183 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 RCN3Q96D15 328 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SNX27Q96L92 541 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms