RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 STX16O14662 325 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PIP5K1BO14986 540 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 AKAP10O43572 662 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PRAMEF11O60813 436 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TRMUO75648 421 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CNTN5O94779 1100 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 NPPAP01160 153 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 UMPSP11172 480 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CD9P21926 228 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 FASP25445 335 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CDK9P50750 372 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 NME5P56597 212 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 BIRC2Q13490 618 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 LRRC23Q53EV4 343 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TXNDC11Q6PKC3 985 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 BLOC1S3Q6QNY0 202 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 AMIGO2Q86SJ2 522 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PIM3Q86V86 326 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 ERI1Q8IV48 349 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 RNF168Q8IYW5 571 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 BBS5Q8N3I7 341 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PGBD5Q8N414 524 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TNIP2Q8NFZ5 429 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CIB1Q99828 191 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 SEMA3CQ99985 751 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 C9orf16Q9BUW7 83 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 AGPAT4Q9NRZ5 378 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 COMMD8Q9NX08 183 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 DUS2Q9NX74 493 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 ABI2Q9NYB9 513 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CIDEBQ9UHD4 219 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 VPS9D1Q9Y2B5 631 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 A0A1W2PP18 115 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TTC24A2A3L6 582 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CCDC162PA2VCL2 907 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TRIM64A6NGJ6 449 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 NR5A2O00482 541 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 IGLV3-27P01718 113 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 SERPINF2P08697 491 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PRR35P0CG20 571 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 EPCAMP16422 314 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 SLC6A2P23975 617 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 KPNA1P52294 538 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CDH13P55290 713 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CLCQ05315 142 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 RPS6KA2Q15349 733 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CYTH1Q15438 398 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PFKFB4Q16877 469 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 GEN1Q17RS7 908 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 ANKS6Q68DC2 871 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 LAYNQ6UX15 382 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 LDB1Q86U70 411 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PTRH1Q86Y79 214 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 LZICQ8WZA0 190 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 LRRC58Q96CX6 371 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CENPNQ96H22 339 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 DNAJC1Q96KC8 554 aaKnown RBP12.81□□□□□ -0.36
C9orf3-201ENST00000277198 MYRFLQ96LU7 910 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 TAS2R13Q9NYV9 303 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 CD207Q9UJ71 328 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 PCDHB5Q9Y5E4 795 aa12.81□□□□□ -0.36
C9orf3-201ENST00000277198 A0A087WXM4 84 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 OR51F1A6NGY5 319 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 ZNF839A8K0R7 811 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 FXYD1O00168 92 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 SYN3O14994 580 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 MBTPS2O43462 519 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 KLK8O60259 260 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 LILRB3O75022 631 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 TIPRLO75663 272 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 NDST3O95803 873 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 MLYCDO95822 493 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 CNPP09543 421 aaKnown RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 GFAPP14136 432 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 HGFP14210 728 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 CAPN3P20807 821 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 ATP6V1B2P21281 511 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 MYF6P23409 242 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 ZNF235Q14590 738 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 OR4D1Q15615 310 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 AASDHQ4L235 1098 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 TBCELQ5QJ74 424 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 PDE12Q6L8Q7 609 aaKnown RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 FUT10Q6P4F1 479 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 SYCE2Q6PIF2 218 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 PRR23BQ6ZRT6 265 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 ZNF354CQ86Y25 554 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 MYO1HQ8N1T3 1032 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 C12orf76Q8N812 135 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 DRAXINQ8NBI3 349 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 SMRP1Q8NCR6 262 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 IGSF8Q969P0 613 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 TUBGCP3Q96CW5 907 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 BIRC8Q96P09 236 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 SLC52A3Q9NQ40 469 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 NLE1Q9NVX2 485 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 ARIH1Q9Y4X5 557 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-201ENST00000277198 KCTD3Q9Y597 815 aa12.8□□□□□ -0.36
C9orf3-201ENST00000277198 PCDHA9Q9Y5H5 950 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms