RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TRAFD1O14545 582 aaPredicted RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 AHCYL1O43865 530 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 OR4F21O95013 312 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CDH5P33151 784 aaPredicted RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 SLC26A3P40879 764 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 HNMTP50135 292 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 MINDY4Q4G0A6 757 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 VARS2Q5ST30 1063 aaKnown RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 NAPRTQ6XQN6 538 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 ZNF730Q6ZMV8 503 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CEP68Q76N32 757 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CXXC5Q7LFL8 322 aaKnown RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 CPNE9Q8IYJ1 553 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 PRSS58Q8IYP2 241 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 ZMIZ2Q8NF64 920 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NEK7Q8TDX7 302 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 LENG8Q96PV6 779 aaPredicted RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 HOPXQ9BPY8 73 aaPredicted RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 MRPS33Q9Y291 106 aaKnown RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 TCAF1Q9Y4C2 921 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 SLC31A1O15431 190 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 TPST2O60704 377 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 C22orf31O95567 290 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CACNG1Q06432 222 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NDUFA5Q16718 116 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CA9Q16790 459 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 PITRM1Q5JRX3 1037 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 FITM2Q8N6M3 262 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 TIFAQ96CG3 184 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 PCDHB1Q9Y5F3 818 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 FAM25EA8MYX2 175 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CLDN9O95484 217 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 GNRH1P01148 92 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CREB1P16220 341 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NCK1P16333 377 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CCNCP24863 283 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NRLP54845 237 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 SLC10A6Q3KNW5 377 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 SERPINA9Q86WD7 417 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CRYBG2Q8N1P7 616 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CLEC4DQ8WXI8 215 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NKD2Q969F2 451 aaPredicted RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 SDCBP2Q9H190 292 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 EXD2Q9NVH0 621 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 NKIRAS2Q9NYR9 191 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 EIF2B4Q9UI10 523 aaKnown RBP11.38□□□□□ -0.59
USP53-201ENST00000274030 CDH22Q9UJ99 828 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 FBXW2Q9UKT8 454 aa11.38□□□□□ -0.59
USP53-201ENST00000274030 CASKO14936 926 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 LGR5O75473 907 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 POU2F1P14859 743 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CHRNA4P43681 627 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PAOXQ6QHF9 649 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CHST15Q7LFX5 561 aaPredicted RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 SPATA19Q7Z5L4 167 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 BEND7Q8N7W2 519 aaPredicted RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 C5orf34Q96MH7 638 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 TRNT1Q96Q11 434 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 CHID1Q9BWS9 393 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 SUCOQ9UBS9 1254 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 IKZF2Q9UKS7 526 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 NDRG2Q9UN36 371 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 DGKBQ9Y6T7 804 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PDE4DIPQ5VU43 2346 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CPSF4LA6NMK7 179 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 ERN1O75460 977 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 MATN4O95460 622 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 IDSP22304 550 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 DENND5AQ6IQ26 1287 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 TBC1D21Q8IYX1 336 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 FAM81AQ8TBF8 368 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 ZCCHC10Q8TBK6 192 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 FCRL4Q96PJ5 515 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 TEFMQ96QE5 360 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 S100A14Q9HCY8 104 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 SEMA3GQ9NS98 782 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 RCOR3Q9P2K3 495 aaPredicted RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 SAMD4AQ9UPU9 718 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 TTC24A2A3L6 582 aaPredicted RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 H3BNH8 94 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 INSIG1O15503 277 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 ECDO95905 644 aaPredicted RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 TBX18O95935 607 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 SERPINA1P01009 418 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PRKCGP05129 697 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CHRNB2P17787 502 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 LIMK2P53671 638 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CASP9P55211 416 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 JAM2P57087 298 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 HSPB3Q12988 150 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 CHIT1Q13231 466 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 QPRTQ15274 297 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 LDLRAP1Q5SW96 308 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 TRMT10BQ6PF06 316 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 TMEM192Q8IY95 271 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PIK3C3Q8NEB9 887 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PIGKQ92643 395 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 PMEPA1Q969W9 287 aa11.37□□□□□ -0.59
USP53-201ENST00000274030 TDRD1Q9BXT4 1180 aaKnown RBP11.37□□□□□ -0.59
USP53-201ENST00000274030 SLC25A51Q9H1U9 297 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms