RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CIR1Q86X95 450 aaPredicted RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ZCCHC9Q8N567 271 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 LPPQ93052 612 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 UROC1Q96N76 676 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 TLE6Q9H808 572 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 BTBD19C9JJ37 291 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 KAT7O95251 611 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 VNN2O95498 520 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 TARBP2Q15633 366 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 RFTN2Q52LD8 501 aaPredicted RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 CFAP206Q8IYR0 622 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ASB12Q8WXK4 309 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 WNT8BQ93098 351 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 PTPN18Q99952 460 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SNTG1Q9NSN8 517 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 GRHL1Q9NZI5 618 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ROBO2Q9HCK4 1378 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 IGFBP5P24593 272 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ADRA1DP25100 572 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SCGB2B2Q4G0G5 96 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SDR16C5Q8N3Y7 309 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 LRRN4Q8WUT4 740 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 MTMR8Q96EF0 704 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 NPAS2Q99743 824 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SLC39A3Q9BRY0 314 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 TNS3Q68CZ2 1445 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 MDFIC2A0A1B0GVS7 189 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ATP6AP2A0A1C7CYW4 349 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ATP6AP2O75787 350 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 AKAP3O75969 853 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ELOAQ14241 798 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 RIT1Q92963 219 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 MED11Q9P086 117 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ALG5Q9Y673 324 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 NRCAMQ92823 1304 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 RENP00797 406 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ATP4AP20648 1035 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 MAP3K8P41279 467 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 DCST1Q5T197 706 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ANKRD26P1Q6NSI1 321 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 CMTR2Q8IYT2 770 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF565Q8N9K5 539 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF510Q9Y2H8 683 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 C2CD2Q9Y426 696 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 LOC100509620A0A075B734 347 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 FADS2P1A8MWK0 482 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 CLEC3AO75596 197 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 PAEPP09466 180 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ARFRP1Q13795 201 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF782Q6ZMW2 699 aaPredicted RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SLC25A36Q96CQ1 311 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 MYO19Q96H55 970 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF570Q96NI8 536 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SEMA6BQ9H3T3 888 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 BRD7Q9NPI1 651 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 KANTRA0A1W2PQU2 76 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM150BA6NC51 233 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 OR1F1O43749 312 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 KCTD4Q8WVF5 259 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 HTATIP2Q9BUP3 242 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 CFIP05156 583 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 PRKCHP24723 683 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 CCR10P46092 362 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 PRR5P85299 388 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SLC30A10Q6XR72 485 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SMG7Q92540 1137 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 SPATA31A3Q5VYP0 1347 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ADCYAP1R1P41586 468 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 RPS9P46781 194 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 NAA20P61599 178 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CSTF1Q05048 431 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 FAPQ12884 760 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CLCA4Q14CN2 919 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CRYBG2Q8N1P7 616 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ETAA1Q9NY74 926 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CD84Q9UIB8 345 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PITPNM1O00562 1244 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CPNE3O75131 537 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ASGR1P07306 291 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 IFI30P13284 250 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ALDH4A1P30038 563 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ICAM3P32942 547 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TAS2R50P59544 299 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 LDLRAP1Q5SW96 308 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 SLC9A4Q6AI14 798 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 COMTD1Q86VU5 262 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 GRM6O15303 877 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PSKH1P11801 424 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 AZGP1P25311 298 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CTBP1Q13363 440 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CDK10Q15131 360 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PHF19Q5T6S3 580 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PRMT5O14744 637 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TGFB3P10600 412 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PSEN1P49768 467 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ARPC4P59998 168 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 S100A12P80511 92 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MRPS6P82932 125 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PITPNAQ00169 270 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 NBPF12Q5TAG4 269 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms