RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 A8MX80 341 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 RP2O75695 350 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 CHAF1BQ13112 559 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 CLCA4Q14CN2 919 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 TEAD4Q15561 434 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF550Q7Z398 422 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 NPAS2Q99743 824 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 TBC1D10AQ9BXI6 508 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 CYTH4Q9UIA0 394 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 CPSF4LA6NMK7 179 aaKnown RBP13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 NUMBP49757 651 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 NDST1P52848 882 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 TLE2Q04725 743 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 OR2T34Q8NGX1 318 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 OR2T3Q8NH03 318 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 GNG13Q9P2W3 67 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 PRKAB1Q9Y478 270 aa13.83□□□□□ -0.19
CCDC88A-201ENST00000263630 PPP1R3GB7ZBB8 358 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 AZIN1O14977 448 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 ZBTB11O95625 1053 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 IFI30P13284 250 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 LPOP22079 712 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM83DQ9H4H8 585 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 ELFN1P0C7U0 828 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 LINC00032P0C843 101 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 RAB4AP20338 218 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 PRR23CQ6ZRP0 262 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 OVCA2Q8WZ82 227 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 TOP1MTQ969P6 601 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 PLEKHA6Q9Y2H5 1048 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 BTG3Q14201 252 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 CES3Q6UWW8 571 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC30A10Q6XR72 485 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 PAQR7Q86WK9 346 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 PQLC1Q8N2U9 271 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 CCNB1P14635 433 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF132P52740 706 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 AARDQ4LEZ3 155 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 RGCCQ9H4X1 137 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 HHLA1C9JL84 531 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC2A2P11168 524 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC25A3Q00325 362 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 LAMTOR4Q0VGL1 99 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 GPR158Q5T848 1215 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 BEND4Q6ZU67 534 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 PDPK1O15530 556 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 SSX5O60225 188 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 RAB2BQ8WUD1 216 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 ASB12Q8WXK4 309 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 OR8D1Q8WZ84 308 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 CREB3L1Q96BA8 519 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 JSRP1Q96MG2 331 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 CEP41Q9BYV8 373 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC5A7Q9GZV3 580 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 C1orf109Q9NX04 203 aa13.83□□□□□ -0.2
CCDC88A-201ENST00000263630 ARPC4-TTLL3A0A0A6YYG9 625 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 RPS12P25398 132 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 INTS6LQ5JSJ4 861 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 WDSUB1Q8N9V3 476 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 DNAAF1Q8NEP3 725 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 MFSD8Q8NHS3 518 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 TBC1D17Q9HA65 648 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 SMPD3Q9NY59 655 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ADH1CP00326 375 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 USP17L7P0C7H9 530 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 NT5EP21589 574 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 CXCR3P49682 368 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 TLE3Q04726 772 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 PNPLA2Q96AD5 504 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 EBNA1BP2Q99848 306 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 PXMP2Q9NR77 195 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 MATKP42679 507 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 E2F1Q01094 437 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 PLEKHG6Q3KR16 790 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 LRRC46Q96FV0 321 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 NODALQ96S42 347 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ASAH2Q9NR71 780 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 NINJ2Q9NZG7 142 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 POLR3HQ9Y535 204 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 NME6O75414 186 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 AMPD1P23109 780 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 MTX3Q5HYI7 312 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF410Q86VK4 478 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 CADM2Q8N3J6 435 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ADAM7Q9H2U9 754 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 GDAP2Q9NXN4 497 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 EDARQ9UNE0 448 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF726A6NNF4 738 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ADRA1DP25100 572 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ECT2LQ008S8 904 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 UBAP2LQ14157 1087 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 HSD17B12Q53GQ0 312 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 HDAC2Q92769 488 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC25A14O95258 325 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 TGFB3P10600 412 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 F8A1P23610 371 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 OR2B6P58173 313 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 HERV-K104P61576 105 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 GFOD2Q3B7J2 385 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 VANGL1Q8TAA9 524 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms