RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SDR16C5Q8N3Y7 309 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 KLHDC9Q8NEP7 349 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 CLHC1Q8NHS4 586 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 ARRDC2Q8TBH0 407 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 EEF1AKMT1Q8WVE0 214 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 AARSD1Q9BTE6 412 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 AGPAT4Q9NRZ5 378 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 IFT80Q9P2H3 777 aaPredicted RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 AFF4Q9UHB7 1163 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 LEF1Q9UJU2 399 aaPredicted RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 TSC22D4Q9Y3Q8 395 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 PLXNA1Q9UIW2 1896 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 NUP214P35658 2090 aaPredicted RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 MOXD2PA6NHM9 499 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 LSM1O15116 133 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 IL7RP16871 459 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 CLCN2P51788 898 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 GNA12Q03113 381 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 TBPL2Q6SJ96 375 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 LINGO4Q6UY18 593 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 BRSK1Q8TDC3 778 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 ZUFSPQ96AP4 578 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 MYRFLQ96LU7 910 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 ASB2Q96Q27 587 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 SLC30A3Q99726 388 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 CORO1BQ9BR76 489 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 ABCG8Q9H221 673 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 RPF2Q9H7B2 306 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 POLR3BQ9NW08 1133 aaPredicted RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 FKBPLQ9UIM3 349 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 SARDHQ9UL12 918 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 ZFC3H1O60293 1989 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 SBF1O95248 1867 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 TMEM221A6NGB7 291 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 NT5C1B-RDH14C9J2C7 533 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 VARSP26640 1264 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 LSM3P62310 102 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 RPS24P62847 133 aaKnown RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 TUBA4AP68366 448 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 PRKG2Q13237 762 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 MANEALQ5VSG8 457 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 FAM171A1Q5VUB5 890 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 BORAQ6PGQ7 559 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 GLB1LQ6UWU2 654 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 GPRIN3Q6ZVF9 776 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 LRRC49Q8IUZ0 686 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 HS3ST5Q8IZT8 346 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 MINDY1Q8N5J2 469 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 TMEM125Q96AQ2 219 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 MYEOVQ96EZ4 313 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 FEM1CQ96JP0 617 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 CCSER2Q9H7U1 834 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 RIC8BQ9NVN3 520 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 HACD3Q9P035 362 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 TLR6Q9Y2C9 796 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 POLR3HQ9Y535 204 aaPredicted RBP12.53□□□□□ -0.4
LIG1-201ENST00000263274 SPO11Q9Y5K1 396 aa12.53□□□□□ -0.4
LIG1-201ENST00000263274 C2orf81A6NN90 581 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 SYCE1LA8MT33 242 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 FGF1P05230 155 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 CAPN1P07384 714 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 ATXN1LP0C7T5 689 aaKnown RBP12.52□□□□□ -0.4
LIG1-201ENST00000263274 FCGR1AP12314 374 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 CD247P20963 164 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 MC4RP32245 332 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 STC1P52823 247 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 ITGADQ13349 1161 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 SPESP1Q6UW49 350 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 GPR180Q86V85 440 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 UMODL1-AS1Q8N2C9 162 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 OR56A4Q8NGH8 313 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 SKA2Q8WVK7 121 aaPredicted RBP12.52□□□□□ -0.4
LIG1-201ENST00000263274 ATOH8Q96SQ7 321 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 BEGAINQ9BUH8 593 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 NPLQ9BXD5 320 aaPredicted RBP12.52□□□□□ -0.4
LIG1-201ENST00000263274 SMURF2Q9HAU4 748 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 ARNT2Q9HBZ2 717 aa12.52□□□□□ -0.4
LIG1-201ENST00000263274 SDR39U1Q9NRG7 319 aaPredicted RBP12.52□□□□□ -0.4
LIG1-201ENST00000263274 F5H5T6 163 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 H0YJX3 145 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 HAS3O00219 553 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 BMP10O95393 424 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 PEX11BO96011 259 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 IGLV3-25P01717 112 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 HLA-DPA1P20036 260 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 PRKACGP22612 351 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 RFC2P35250 354 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 PBX3P40426 434 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 HTR6P50406 440 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 CCT8P50990 548 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 EMP3P54852 163 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 IL2P60568 153 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 KIAA2013Q8IYS2 634 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 TBC1D21Q8IYX1 336 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 BTN2A3PQ96KV6 586 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 ZNHIT2Q9UHR6 403 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 ASB1Q9Y576 335 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 H0Y626 953 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 SNAP91O60641 907 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms