RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PIP4K2BP78356 416 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 PLPPR3Q6T4P5 718 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 CROCCP2Q86T23 111 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 MRVI1Q9Y6F6 885 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 LRRFIP2Q9Y608 721 aaKnown RBP5.46□□□□□ -1.54
SCN1A-220ENST00000641603 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.46□□□□□ -1.54
SCN1A-220ENST00000641603 STX1AQ16623 288 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 EPB41L2O43491 1005 aaKnown RBP5.46□□□□□ -1.54
SCN1A-220ENST00000641603 BANK1Q8NDB2 785 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 EVC2Q86UK5 1308 aa5.46□□□□□ -1.54
SCN1A-220ENST00000641603 SERPINC1P01008 464 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 LMAN1P49257 510 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ATL3Q6DD88 541 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ATF7IPQ6VMQ6 1270 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 CDKL5O76039 1030 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 INTS4Q96HW7 963 aaKnown RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 DAPK1P53355 1430 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 LUC7L3O95232 432 aaKnown RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ADCY5O95622 1261 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ZSCAN23Q3MJ62 389 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ALDH1L2Q3SY69 923 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 FYB1O15117 783 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 FMNL2Q96PY5 1086 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 YY1AP1Q9H869 796 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 RAD50Q92878 1312 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 HMGB1P1B2RPK0 211 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 GCOM1H8Y6P7 765 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 MYZAPP0CAP1 466 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 RAB3GAP1Q15042 981 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC175P0C221 793 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 AP1ARQ63HQ0 302 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 SPATA32Q96LK8 384 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 HDAC1Q13547 482 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 PLCD4Q9BRC7 762 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 MAGEC2Q9UBF1 373 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-220ENST00000641603 ANKS4BQ8N8V4 417 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 CAPN2P17655 700 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 C6orf163Q5TEZ5 329 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 TTC14Q96N46 770 aa5.45□□□□□ -1.54
SCN1A-220ENST00000641603 KIAA1107Q9UPP5 1409 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 STK38Q15208 465 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC141Q6ZP82 1450 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SMARCA4P51532 1647 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SLFN5Q08AF3 891 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 RBBP5Q15291 538 aaKnown RBP5.44□□□□□ -1.54
SCN1A-220ENST00000641603 GOLIM4O00461 696 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 KIF5BP33176 963 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SEPT6Q14141 434 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 LNPKQ9C0E8 428 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 IL16Q14005 1332 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 GOLGA1Q92805 767 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 LRCH2Q5VUJ6 765 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 PDILTQ8N807 584 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SPC24Q8NBT2 197 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 RALGAPBQ86X10 1494 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 RILPL2Q969X0 211 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 RPGRIP1Q96KN7 1286 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SLC8A1P32418 973 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 AIMP1Q12904 312 aaKnown RBP5.44□□□□□ -1.54
SCN1A-220ENST00000641603 NBPF8Q3BBV2 869 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 SPATS2LQ9NUQ6 558 aaKnown RBP5.44□□□□□ -1.54
SCN1A-220ENST00000641603 FSD2A1L4K1 749 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 NSD2O96028 1365 aa5.44□□□□□ -1.54
SCN1A-220ENST00000641603 HDXQ7Z353 690 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 IFT74Q96LB3 600 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 IFIT2P09913 472 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 CCT4P50991 539 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 GOLGA5Q8TBA6 731 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 UTP14AQ9BVJ6 771 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 MX1P20591 662 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 SRPK2P78362 688 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 SLFNL1Q499Z3 407 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 PANK1Q8TE04 598 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 BUB1BO60566 1050 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 WASF1Q92558 559 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 FIBPO43427 364 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 NBPF7P0C2Y1 421 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 FOXD4L5Q5VV16 416 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 EFCAB13Q8IY85 973 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 FOXD4L4Q8WXT5 416 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 PCMTD1Q96MG8 357 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 IMPACTQ9P2X3 320 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 NOL8Q76FK4 1167 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 DIAPH1O60610 1272 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 GORABQ5T7V8 394 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 PABPN1Q86U42 306 aaKnown RBP eCLIP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 PHAXQ9H814 394 aaKnown RBP5.43□□□□□ -1.54
SCN1A-220ENST00000641603 ANKRD30BQ9BXX2 1392 aa5.43□□□□□ -1.54
SCN1A-220ENST00000641603 PRXQ9BXM0 1461 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC172P0C7W6 258 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 MSL1Q68DK7 614 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC121Q6ZUS5 278 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 TAF4BQ92750 862 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 FBXO3Q9UK99 471 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 LUC7L2Q9Y383 392 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 C14orf37Q86TY3 774 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 TEX2Q8IWB9 1127 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 C16orf45Q96MC5 204 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms