RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 TATP17735 454 aaPredicted RBP24.81■■□□□ 1.56
CLN3-258ENST00000637184 MYH16Q9H6N6 1097 aa24.81■■□□□ 1.56
CLN3-258ENST00000637184 RTF1Q92541 710 aaKnown RBP24.8■■□□□ 1.56
CLN3-258ENST00000637184 GNAT3A8MTJ3 354 aa24.8■■□□□ 1.56
CLN3-258ENST00000637184 THUMPD2Q9BTF0 503 aaKnown RBP24.8■■□□□ 1.56
CLN3-258ENST00000637184 CRB1P82279 1406 aa24.8■■□□□ 1.56
CLN3-258ENST00000637184 HTATSF1O43719 755 aaKnown RBP24.79■■□□□ 1.56
CLN3-258ENST00000637184 DCTN1Q14203 1278 aa24.79■■□□□ 1.56
CLN3-258ENST00000637184 MAP3K5Q99683 1374 aa24.78■■□□□ 1.56
CLN3-258ENST00000637184 PLEKHG2Q9H7P9 1386 aa24.78■■□□□ 1.56
CLN3-258ENST00000637184 MCM10Q7L590 875 aa24.77■■□□□ 1.56
CLN3-258ENST00000637184 MEGF6O75095 1541 aa24.77■■□□□ 1.56
CLN3-258ENST00000637184 ZNF530Q6P9A1 599 aaPredicted RBP24.77■■□□□ 1.56
CLN3-258ENST00000637184 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.76■■□□□ 1.55
CLN3-258ENST00000637184 NWD2Q9ULI1 1742 aa24.76■■□□□ 1.55
CLN3-258ENST00000637184 AKAP4Q5JQC9 854 aa24.75■■□□□ 1.55
CLN3-258ENST00000637184 C1orf141Q5JVX7 400 aa24.75■■□□□ 1.55
CLN3-258ENST00000637184 SPG7Q9UQ90 795 aa24.75■■□□□ 1.55
CLN3-258ENST00000637184 PARP4Q9UKK3 1724 aaKnown RBP24.74■■□□□ 1.55
CLN3-258ENST00000637184 GNAI1P63096 354 aa24.74■■□□□ 1.55
CLN3-258ENST00000637184 IFT57Q9NWB7 429 aa24.74■■□□□ 1.55
CLN3-258ENST00000637184 USP35Q9P2H5 1018 aa24.74■■□□□ 1.55
CLN3-258ENST00000637184 LAS1LQ9Y4W2 734 aaKnown RBP24.74■■□□□ 1.55
CLN3-258ENST00000637184 SUPT16HQ9Y5B9 1047 aaKnown RBP24.74■■□□□ 1.55
CLN3-258ENST00000637184 NRAPQ86VF7 1730 aa24.74■■□□□ 1.55
CLN3-258ENST00000637184 SLIT2O94813 1529 aa24.73■■□□□ 1.55
CLN3-258ENST00000637184 FANCIQ9NVI1 1328 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 IL2RBP14784 551 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 TSR2Q969E8 191 aaKnown RBP24.72■■□□□ 1.55
CLN3-258ENST00000637184 RCAN3Q9UKA8 241 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 OVOS2A0A0G2JMS6 1433 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 NGLY1Q96IV0 654 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 CFAP44Q96MT7 982 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 C8orf37Q96NL8 207 aa24.72■■□□□ 1.55
CLN3-258ENST00000637184 PKD1L3Q7Z443 1732 aa24.71■■□□□ 1.55
CLN3-258ENST00000637184 LRP6O75581 1613 aa24.71■■□□□ 1.55
CLN3-258ENST00000637184 ZNF853P0CG23 659 aa24.7■■□□□ 1.55
CLN3-258ENST00000637184 IL17REQ8NFR9 667 aa24.7■■□□□ 1.54
CLN3-258ENST00000637184 LRRC37A3O60309 1634 aa24.67■■□□□ 1.54
CLN3-258ENST00000637184 MEX3CQ5U5Q3 659 aaKnown RBP24.67■■□□□ 1.54
CLN3-258ENST00000637184 UNC5CLQ8IV45 518 aa24.67■■□□□ 1.54
CLN3-258ENST00000637184 IFNL2Q8IZJ0 200 aa24.67■■□□□ 1.54
CLN3-258ENST00000637184 ZCRB1Q8TBF4 217 aaKnown RBP24.67■■□□□ 1.54
CLN3-258ENST00000637184 MBIPQ9NS73 344 aa24.67■■□□□ 1.54
CLN3-258ENST00000637184 MPRIPQ6WCQ1 1025 aa24.66■■□□□ 1.54
CLN3-258ENST00000637184 CEMIPQ8WUJ3 1361 aa24.66■■□□□ 1.54
CLN3-258ENST00000637184 VIRMAQ69YN4 1812 aaKnown RBP24.66■■□□□ 1.54
CLN3-258ENST00000637184 PHKG2P15735 406 aa24.65■■□□□ 1.54
CLN3-258ENST00000637184 FNBP4Q8N3X1 1017 aaPredicted RBP24.65■■□□□ 1.54
CLN3-258ENST00000637184 SPATA31A1Q5TZJ5 1347 aa24.65■■□□□ 1.54
CLN3-258ENST00000637184 CHL1O00533 1208 aa24.65■■□□□ 1.54
CLN3-258ENST00000637184 EXOSC9Q06265 439 aaKnown RBP24.65■■□□□ 1.54
CLN3-258ENST00000637184 LGR6Q9HBX8 967 aa24.65■■□□□ 1.54
CLN3-258ENST00000637184 RNMTO43148 476 aaKnown RBP24.64■■□□□ 1.53
CLN3-258ENST00000637184 THRAP3Q9Y2W1 955 aaKnown RBP24.64■■□□□ 1.53
CLN3-258ENST00000637184 PCDH11XQ9BZA7 1347 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 PCDH11YQ9BZA8 1340 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 CYP27B1O15528 508 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 CCDC9Q9Y3X0 531 aaKnown RBP24.63■■□□□ 1.53
CLN3-258ENST00000637184 SPATA31A5Q5VU36 1347 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 SPATA31A7Q8IWB4 1347 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 BCL9LQ86UU0 1499 aa24.63■■□□□ 1.53
CLN3-258ENST00000637184 HSP90AB1P08238 724 aaKnown RBP24.62■■□□□ 1.53
CLN3-258ENST00000637184 CT47B1P0C2W7 299 aaPredicted RBP24.62■■□□□ 1.53
CLN3-258ENST00000637184 TAF7Q15545 349 aaPredicted RBP24.62■■□□□ 1.53
CLN3-258ENST00000637184 GTF3C3Q9Y5Q9 886 aa24.62■■□□□ 1.53
CLN3-258ENST00000637184 DISP2A7MBM2 1401 aa24.62■■□□□ 1.53
CLN3-258ENST00000637184 WNK3Q9BYP7 1800 aa24.61■■□□□ 1.53
CLN3-258ENST00000637184 NEFLP07196 543 aa24.61■■□□□ 1.53
CLN3-258ENST00000637184 TEFQ10587 303 aa24.61■■□□□ 1.53
CLN3-258ENST00000637184 ADAMTS7Q9UKP4 1686 aa24.6■■□□□ 1.53
CLN3-258ENST00000637184 TSPYL4Q9UJ04 414 aa24.6■■□□□ 1.53
CLN3-258ENST00000637184 USP21Q9UK80 565 aa24.6■■□□□ 1.53
CLN3-258ENST00000637184 SCN11AQ9UI33 1791 aa24.6■■□□□ 1.53
CLN3-258ENST00000637184 CDCA7Q9BWT1 371 aaPredicted RBP24.59■■□□□ 1.53
CLN3-258ENST00000637184 BABAM1Q9NWV8 329 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 RNF123Q5XPI4 1314 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 VPS72Q15906 364 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 DCAF5Q96JK2 942 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 MIS18AQ9NYP9 233 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 SHANK3Q9BYB0 1731 aa24.59■■□□□ 1.53
CLN3-258ENST00000637184 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.59■■□□□ 1.53
CLN3-258ENST00000637184 DDX54Q8TDD1 881 aaKnown RBP24.57■■□□□ 1.52
CLN3-258ENST00000637184 KDM6AO15550 1401 aaPredicted RBP24.57■■□□□ 1.52
CLN3-258ENST00000637184 RRP1P56182 461 aaKnown RBP24.55■■□□□ 1.52
CLN3-258ENST00000637184 BARGINQ6ZT62 677 aa24.55■■□□□ 1.52
CLN3-258ENST00000637184 EXOC5O00471 708 aa24.54■■□□□ 1.52
CLN3-258ENST00000637184 AFF2P51816 1311 aa24.54■■□□□ 1.52
CLN3-258ENST00000637184 RARSP54136 660 aaKnown RBP24.54■■□□□ 1.52
CLN3-258ENST00000637184 NKX1-1Q15270 411 aaPredicted RBP24.53■■□□□ 1.52
CLN3-258ENST00000637184 TWISTNBQ3B726 338 aaPredicted RBP24.53■■□□□ 1.52
CLN3-258ENST00000637184 C8orf58Q8NAV2 365 aa24.53■■□□□ 1.52
CLN3-258ENST00000637184 SIPA1L3O60292 1781 aaPredicted RBP24.53■■□□□ 1.52
CLN3-258ENST00000637184 BTBD11A6QL63 1104 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 BCAR3O75815 825 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 TSPYL6Q8N831 410 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 FBXO41Q8TF61 875 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 ZNF428Q96B54 188 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 SLC52A2Q9HAB3 445 aa24.52■■□□□ 1.52
CLN3-258ENST00000637184 ELL2O00472 640 aaPredicted RBP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms