RNA–Protein interactions for RNA: ENST00000628496.2

SOX2-OT-248, SOX2 overlapping transcript, humanhuman

TSL 5

Gene SOX2-OT, Length 801 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-248ENST00000628496 DDX54Q8TDD1 881 aaKnown RBP18.37■□□□□ 0.53
SOX2-OT-248ENST00000628496 PARD3Q8TEW0 1356 aa18.37■□□□□ 0.53
SOX2-OT-248ENST00000628496 COL3A1P02461 1466 aaPredicted RBP18.37■□□□□ 0.53
SOX2-OT-248ENST00000628496 PPP2R1AP30153 589 aa18.36■□□□□ 0.53
SOX2-OT-248ENST00000628496 TNS1Q9HBL0 1735 aaKnown RBP18.36■□□□□ 0.53
SOX2-OT-248ENST00000628496 RGPD1P0DJD0 1748 aa18.35■□□□□ 0.53
SOX2-OT-248ENST00000628496 SHANK3Q9BYB0 1731 aa18.35■□□□□ 0.53
SOX2-OT-248ENST00000628496 ZNF316A6NFI3 1004 aaPredicted RBP18.34■□□□□ 0.53
SOX2-OT-248ENST00000628496 PTF1AQ7RTS3 328 aa18.34■□□□□ 0.53
SOX2-OT-248ENST00000628496 AEBP1Q8IUX7 1158 aa18.34■□□□□ 0.53
SOX2-OT-248ENST00000628496 MSH5O43196 834 aa18.33■□□□□ 0.52
SOX2-OT-248ENST00000628496 DIAPH1O60610 1272 aaKnown RBP18.33■□□□□ 0.52
SOX2-OT-248ENST00000628496 KDRP35968 1356 aa18.32■□□□□ 0.52
SOX2-OT-248ENST00000628496 BAG6P46379 1132 aa18.32■□□□□ 0.52
SOX2-OT-248ENST00000628496 ACSBG1Q96GR2 724 aa18.32■□□□□ 0.52
SOX2-OT-248ENST00000628496 PCDH11XQ9BZA7 1347 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 PCDH11YQ9BZA8 1340 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 CYP27B1O15528 508 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 KCNQ2O43526 872 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 APBA3O96018 575 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 EN1Q05925 392 aaPredicted RBP18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 NCBP3Q53F19 620 aaKnown RBP18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 SULT6B1Q6IMI4 303 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 BCL11BQ9C0K0 894 aaPredicted RBP18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 PKD1L3Q7Z443 1732 aa18.31■□□□□ 0.52
SOX2-OT-248ENST00000628496 PLEKHG2Q9H7P9 1386 aa18.3■□□□□ 0.52
SOX2-OT-248ENST00000628496 CFAP53Q96M91 514 aa18.29■□□□□ 0.52
SOX2-OT-248ENST00000628496 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.29■□□□□ 0.52
SOX2-OT-248ENST00000628496 SPG7Q9UQ90 795 aa18.29■□□□□ 0.52
SOX2-OT-248ENST00000628496 RALBP1Q15311 655 aa18.28■□□□□ 0.52
SOX2-OT-248ENST00000628496 CAMKK2Q96RR4 588 aa18.28■□□□□ 0.52
SOX2-OT-248ENST00000628496 NHSQ6T4R5 1651 aa18.28■□□□□ 0.52
SOX2-OT-248ENST00000628496 SBF2Q86WG5 1849 aa18.28■□□□□ 0.52
SOX2-OT-248ENST00000628496 HMOX1P09601 288 aa18.27■□□□□ 0.52
SOX2-OT-248ENST00000628496 EZH2Q15910 746 aaKnown RBP18.27■□□□□ 0.52
SOX2-OT-248ENST00000628496 U2SURPO15042 1029 aaKnown RBP18.25■□□□□ 0.51
SOX2-OT-248ENST00000628496 PHKG2P15735 406 aa18.25■□□□□ 0.51
SOX2-OT-248ENST00000628496 PRIM1P49642 420 aaKnown RBP18.24■□□□□ 0.51
SOX2-OT-248ENST00000628496 NKX1-1Q15270 411 aaPredicted RBP18.24■□□□□ 0.51
SOX2-OT-248ENST00000628496 PLEKHO1Q53GL0 409 aaPredicted RBP18.24■□□□□ 0.51
SOX2-OT-248ENST00000628496 DOT1LQ8TEK3 1739 aa18.23■□□□□ 0.51
SOX2-OT-248ENST00000628496 PLSCR1O15162 318 aa18.23■□□□□ 0.51
SOX2-OT-248ENST00000628496 AMOTQ4VCS5 1084 aa18.23■□□□□ 0.51
SOX2-OT-248ENST00000628496 ZNF530Q6P9A1 599 aaPredicted RBP18.22■□□□□ 0.51
SOX2-OT-248ENST00000628496 IFNL2Q8IZJ0 200 aa18.22■□□□□ 0.51
SOX2-OT-248ENST00000628496 SYTL4Q96C24 671 aaPredicted RBP18.22■□□□□ 0.51
SOX2-OT-248ENST00000628496 PRKRIP1Q9H875 184 aaPredicted RBP18.22■□□□□ 0.51
SOX2-OT-248ENST00000628496 MYBBP1AQ9BQG0 1328 aaKnown RBP18.22■□□□□ 0.51
SOX2-OT-248ENST00000628496 TOGARAM1Q9Y4F4 1720 aa18.2■□□□□ 0.5
SOX2-OT-248ENST00000628496 NUDCQ9Y266 331 aa18.2■□□□□ 0.5
SOX2-OT-248ENST00000628496 RREB1Q92766 1687 aa18.19■□□□□ 0.5
SOX2-OT-248ENST00000628496 PROM2Q8N271 834 aa18.19■□□□□ 0.5
SOX2-OT-248ENST00000628496 RSPH6AQ9H0K4 717 aa18.19■□□□□ 0.5
SOX2-OT-248ENST00000628496 RGPD3A6NKT7 1758 aaPredicted RBP18.19■□□□□ 0.5
SOX2-OT-248ENST00000628496 RGPD4Q7Z3J3 1758 aa18.19■□□□□ 0.5
SOX2-OT-248ENST00000628496 KDM6AO15550 1401 aaPredicted RBP18.18■□□□□ 0.5
SOX2-OT-248ENST00000628496 U2AF1L5P0DN76 240 aaPredicted RBP18.18■□□□□ 0.5
SOX2-OT-248ENST00000628496 U2AF1Q01081 240 aaKnown RBP eCLIP18.18■□□□□ 0.5
SOX2-OT-248ENST00000628496 BTAF1O14981 1849 aa18.18■□□□□ 0.5
SOX2-OT-248ENST00000628496 MTHFSDQ2M296 383 aaKnown RBP18.17■□□□□ 0.5
SOX2-OT-248ENST00000628496 C1orf141Q5JVX7 400 aa18.17■□□□□ 0.5
SOX2-OT-248ENST00000628496 HSP90AB1P08238 724 aaKnown RBP18.16■□□□□ 0.5
SOX2-OT-248ENST00000628496 PRKAR2BP31323 418 aa18.16■□□□□ 0.5
SOX2-OT-248ENST00000628496 TXNRD1Q16881 649 aa18.16■□□□□ 0.5
SOX2-OT-248ENST00000628496 MPRIPQ6WCQ1 1025 aa18.16■□□□□ 0.5
SOX2-OT-248ENST00000628496 DCAF5Q96JK2 942 aa18.16■□□□□ 0.5
SOX2-OT-248ENST00000628496 NUP188Q5SRE5 1749 aa18.15■□□□□ 0.5
SOX2-OT-248ENST00000628496 PIGBQ92521 554 aa18.15■□□□□ 0.5
SOX2-OT-248ENST00000628496 FCHSD2O94868 740 aa18.14■□□□□ 0.49
SOX2-OT-248ENST00000628496 AKAP4Q5JQC9 854 aa18.14■□□□□ 0.49
SOX2-OT-248ENST00000628496 PHACTR3Q96KR7 559 aa18.14■□□□□ 0.49
SOX2-OT-248ENST00000628496 TMOD3Q9NYL9 352 aa18.13■□□□□ 0.49
SOX2-OT-248ENST00000628496 ERVV-2B6SEH9 535 aa18.12■□□□□ 0.49
SOX2-OT-248ENST00000628496 ANO8Q9HCE9 1232 aaPredicted RBP18.12■□□□□ 0.49
SOX2-OT-248ENST00000628496 LRRC4BQ9NT99 713 aa18.12■□□□□ 0.49
SOX2-OT-248ENST00000628496 PALLDQ8WX93 1383 aa18.11■□□□□ 0.49
SOX2-OT-248ENST00000628496 PSDA5PKW4 1024 aaPredicted RBP18.1■□□□□ 0.49
SOX2-OT-248ENST00000628496 NPM3O75607 178 aaKnown RBP18.1■□□□□ 0.49
SOX2-OT-248ENST00000628496 R3HDM1Q15032 1099 aaKnown RBP18.1■□□□□ 0.49
SOX2-OT-248ENST00000628496 GAS2L2Q8NHY3 880 aa18.1■□□□□ 0.49
SOX2-OT-248ENST00000628496 LGR6Q9HBX8 967 aa18.1■□□□□ 0.49
SOX2-OT-248ENST00000628496 MAP3K5Q99683 1374 aa18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 RNMTO43148 476 aaKnown RBP18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 KCNQ4P56696 695 aa18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 PLEKHF1Q96S99 279 aa18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 ASAP1Q9ULH1 1129 aa18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 PAPPAQ13219 1627 aa18.09■□□□□ 0.49
SOX2-OT-248ENST00000628496 ITGB4P16144 1822 aa18.08■□□□□ 0.48
SOX2-OT-248ENST00000628496 CABP4P57796 275 aa18.08■□□□□ 0.48
SOX2-OT-248ENST00000628496 SLC27A3Q5K4L6 730 aa18.08■□□□□ 0.48
SOX2-OT-248ENST00000628496 NBPF14Q5TI25 921 aa18.08■□□□□ 0.48
SOX2-OT-248ENST00000628496 MRC1P22897 1456 aa18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 LY75O60449 1722 aa18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 ADAMTS7Q9UKP4 1686 aa18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 SMARCC1Q92922 1105 aaPredicted RBP18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 ATG3Q9NT62 314 aa18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 CCNL1Q9UK58 526 aaPredicted RBP18.07■□□□□ 0.48
SOX2-OT-248ENST00000628496 GNAT3A8MTJ3 354 aa18.06■□□□□ 0.48
SOX2-OT-248ENST00000628496 ANP32CO43423 234 aa18.06■□□□□ 0.48
SOX2-OT-248ENST00000628496 NFATC2IPQ8NCF5 419 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms