RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ANKRD36BQ8N2N9 1353 aa20.18■□□□□ 0.82
SNX1-214ENST00000625244 LY75O60449 1722 aa20.17■□□□□ 0.82
SNX1-214ENST00000625244 IGSF1Q8N6C5 1336 aa20.17■□□□□ 0.82
SNX1-214ENST00000625244 TOMM70O94826 608 aa20.16■□□□□ 0.82
SNX1-214ENST00000625244 PRELPP51888 382 aa20.16■□□□□ 0.82
SNX1-214ENST00000625244 EVC2Q86UK5 1308 aa20.14■□□□□ 0.81
SNX1-214ENST00000625244 HTRA3P83110 453 aa20.14■□□□□ 0.81
SNX1-214ENST00000625244 TNS4Q8IZW8 715 aa20.14■□□□□ 0.81
SNX1-214ENST00000625244 KLRG1Q96E93 195 aa20.13■□□□□ 0.81
SNX1-214ENST00000625244 USP31Q70CQ4 1352 aa20.12■□□□□ 0.81
SNX1-214ENST00000625244 KTN1Q86UP2 1357 aaKnown RBP20.12■□□□□ 0.81
SNX1-214ENST00000625244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.12■□□□□ 0.81
SNX1-214ENST00000625244 JMYQ8N9B5 988 aa20.12■□□□□ 0.81
SNX1-214ENST00000625244 DOT1LQ8TEK3 1739 aa20.1■□□□□ 0.81
SNX1-214ENST00000625244 NME9Q86XW9 330 aa20.1■□□□□ 0.81
SNX1-214ENST00000625244 USP47Q96K76 1375 aa20.09■□□□□ 0.81
SNX1-214ENST00000625244 NMRK2Q9NPI5 230 aa20.09■□□□□ 0.81
SNX1-214ENST00000625244 LTN1O94822 1766 aa20.08■□□□□ 0.81
SNX1-214ENST00000625244 WDR90Q96KV7 1748 aa20.08■□□□□ 0.81
SNX1-214ENST00000625244 AMIGO3Q86WK7 504 aa20.08■□□□□ 0.81
SNX1-214ENST00000625244 FLAD1Q8NFF5 587 aa20.08■□□□□ 0.81
SNX1-214ENST00000625244 LTV1Q96GA3 475 aaPredicted RBP20.07■□□□□ 0.8
SNX1-214ENST00000625244 CICQ96RK0 1608 aaPredicted RBP20.05■□□□□ 0.8
SNX1-214ENST00000625244 SMIM5Q71RC9 77 aa20.05■□□□□ 0.8
SNX1-214ENST00000625244 ZCRB1Q8TBF4 217 aaKnown RBP20.05■□□□□ 0.8
SNX1-214ENST00000625244 RBM46Q8TBY0 533 aaKnown RBP20.04■□□□□ 0.8
SNX1-214ENST00000625244 IP6K1Q92551 441 aa20.03■□□□□ 0.8
SNX1-214ENST00000625244 C5P01031 1676 aa20.03■□□□□ 0.8
SNX1-214ENST00000625244 USP54Q70EL1 1684 aa20.03■□□□□ 0.8
SNX1-214ENST00000625244 SBNO2Q9Y2G9 1366 aa20.02■□□□□ 0.8
SNX1-214ENST00000625244 MON2Q7Z3U7 1717 aa20.01■□□□□ 0.79
SNX1-214ENST00000625244 PHF14O94880 888 aa20■□□□□ 0.79
SNX1-214ENST00000625244 MEGF6O75095 1541 aa20■□□□□ 0.79
SNX1-214ENST00000625244 AK7Q96M32 723 aa19.99■□□□□ 0.79
SNX1-214ENST00000625244 PALLDQ8WX93 1383 aa19.98■□□□□ 0.79
SNX1-214ENST00000625244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.98■□□□□ 0.79
SNX1-214ENST00000625244 FSTL1Q12841 308 aa19.98■□□□□ 0.79
SNX1-214ENST00000625244 C16orf71Q8IYS4 520 aaPredicted RBP19.98■□□□□ 0.79
SNX1-214ENST00000625244 CD163L1Q9NR16 1453 aa19.98■□□□□ 0.79
SNX1-214ENST00000625244 TOGARAM1Q9Y4F4 1720 aa19.97■□□□□ 0.79
SNX1-214ENST00000625244 BCS1LQ9Y276 419 aa19.97■□□□□ 0.79
SNX1-214ENST00000625244 FAM208AQ9UK61 1670 aaKnown RBP19.97■□□□□ 0.79
SNX1-214ENST00000625244 ARHGAP27Q6ZUM4 889 aa19.96■□□□□ 0.79
SNX1-214ENST00000625244 TAF1LQ8IZX4 1826 aa19.96■□□□□ 0.79
SNX1-214ENST00000625244 PXDNLA1KZ92 1463 aa19.96■□□□□ 0.79
SNX1-214ENST00000625244 C4BP0C0L5 1744 aa19.96■□□□□ 0.79
SNX1-214ENST00000625244 SLC34A2O95436 690 aa19.95■□□□□ 0.78
SNX1-214ENST00000625244 HMGB2P26583 209 aaKnown RBP19.95■□□□□ 0.78
SNX1-214ENST00000625244 MPRIPQ6WCQ1 1025 aa19.94■□□□□ 0.78
SNX1-214ENST00000625244 A0A0G2JLW4 131 aa19.93■□□□□ 0.78
SNX1-214ENST00000625244 HOXC9P31274 260 aa19.93■□□□□ 0.78
SNX1-214ENST00000625244 HSPA1AP0DMV8 641 aaKnown RBP19.92■□□□□ 0.78
SNX1-214ENST00000625244 HSPA1BP0DMV9 641 aaKnown RBP19.92■□□□□ 0.78
SNX1-214ENST00000625244 C9orf131Q5VYM1 1079 aa19.92■□□□□ 0.78
SNX1-214ENST00000625244 UBR3Q6ZT12 1888 aa19.92■□□□□ 0.78
SNX1-214ENST00000625244 FBLN1P23142 703 aa19.91■□□□□ 0.78
SNX1-214ENST00000625244 SSFA2P28290 1259 aa19.91■□□□□ 0.78
SNX1-214ENST00000625244 TMC1Q8TDI8 760 aa19.91■□□□□ 0.78
SNX1-214ENST00000625244 MAP3K19Q56UN5 1328 aa19.91■□□□□ 0.78
SNX1-214ENST00000625244 RGPD2P0DJD1 1756 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 MMP10P09238 476 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 TGFB2P61812 414 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 NBPF6Q5VWK0 638 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 HDGFL2Q7Z4V5 671 aaPredicted RBP19.9■□□□□ 0.78
SNX1-214ENST00000625244 USHBP1Q8N6Y0 703 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 NBPF4Q96M43 638 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 SLC12A5Q9H2X9 1139 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 EDC4Q6P2E9 1401 aaKnown RBP19.9■□□□□ 0.78
SNX1-214ENST00000625244 KIAA1551Q9HCM1 1747 aa19.9■□□□□ 0.78
SNX1-214ENST00000625244 LINC00116Q8NCU8 138 aa19.89■□□□□ 0.77
SNX1-214ENST00000625244 NSD3Q9BZ95 1437 aa19.89■□□□□ 0.77
SNX1-214ENST00000625244 N4BP2Q86UW6 1770 aaPredicted RBP19.88■□□□□ 0.77
SNX1-214ENST00000625244 KCPQ6ZWJ8 1503 aa19.88■□□□□ 0.77
SNX1-214ENST00000625244 FCHSD2O94868 740 aa19.88■□□□□ 0.77
SNX1-214ENST00000625244 RRAGCQ9HB90 399 aa19.88■□□□□ 0.77
SNX1-214ENST00000625244 CGNL1Q0VF96 1302 aa19.87■□□□□ 0.77
SNX1-214ENST00000625244 DPEP1P16444 411 aa19.87■□□□□ 0.77
SNX1-214ENST00000625244 AMPHP49418 695 aa19.87■□□□□ 0.77
SNX1-214ENST00000625244 SMARCC1Q92922 1105 aaPredicted RBP19.87■□□□□ 0.77
SNX1-214ENST00000625244 PLEKHG2Q9H7P9 1386 aa19.86■□□□□ 0.77
SNX1-214ENST00000625244 RAPGEF4Q8WZA2 1011 aa19.86■□□□□ 0.77
SNX1-214ENST00000625244 KIF13BQ9NQT8 1826 aa19.86■□□□□ 0.77
SNX1-214ENST00000625244 KDM2BQ8NHM5 1336 aa19.85■□□□□ 0.77
SNX1-214ENST00000625244 GNPATO15228 680 aa19.85■□□□□ 0.77
SNX1-214ENST00000625244 PIGBQ92521 554 aa19.85■□□□□ 0.77
SNX1-214ENST00000625244 L3MBTL2Q969R5 705 aa19.85■□□□□ 0.77
SNX1-214ENST00000625244 A0A1W2PP64 1363 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 ROCK2O75116 1388 aaKnown RBP19.84■□□□□ 0.77
SNX1-214ENST00000625244 PCDH11XQ9BZA7 1347 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 PCDH11YQ9BZA8 1340 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 CYP27B1O15528 508 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 SMC1BQ8NDV3 1235 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 C10orf71Q711Q0 1435 aa19.84■□□□□ 0.77
SNX1-214ENST00000625244 LOC102724428A0A0B4J2F2 783 aa19.83■□□□□ 0.77
SNX1-214ENST00000625244 TATP17735 454 aaPredicted RBP19.83■□□□□ 0.77
SNX1-214ENST00000625244 SIK1P57059 783 aa19.83■□□□□ 0.77
SNX1-214ENST00000625244 ITPK1Q13572 414 aa19.82■□□□□ 0.76
SNX1-214ENST00000625244 KCNA3P22001 575 aa19.81■□□□□ 0.76
SNX1-214ENST00000625244 COG3Q96JB2 828 aa19.81■□□□□ 0.76
SNX1-214ENST00000625244 TERF2IPQ9NYB0 399 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms