RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 PPM1GO15355 546 aaPredicted RBP11.23□□□□□ -0.61
NEK3-209ENST00000618856 TRIM37O94972 964 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 MTHFSP49914 203 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 DEFB132Q7Z7B7 95 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 USHBP1Q8N6Y0 703 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 CAMKK2Q96RR4 588 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 BCL11BQ9C0K0 894 aaPredicted RBP11.23□□□□□ -0.61
NEK3-209ENST00000618856 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.23□□□□□ -0.616e-9■■■□□ 17
NEK3-209ENST00000618856 PARD3Q8TEW0 1356 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 NHSQ6T4R5 1651 aa11.23□□□□□ -0.61
NEK3-209ENST00000618856 PLSCR1O15162 318 aa11.22□□□□□ -0.61
NEK3-209ENST00000618856 ZCRB1Q8TBF4 217 aaKnown RBP11.22□□□□□ -0.61
NEK3-209ENST00000618856 RREB1Q92766 1687 aa11.21□□□□□ -0.61
NEK3-209ENST00000618856 TATP17735 454 aaPredicted RBP11.21□□□□□ -0.61
NEK3-209ENST00000618856 BAG6P46379 1132 aa11.21□□□□□ -0.61
NEK3-209ENST00000618856 SF3B2Q13435 895 aaKnown RBP11.21□□□□□ -0.61
NEK3-209ENST00000618856 PTF1AQ7RTS3 328 aa11.21□□□□□ -0.61
NEK3-209ENST00000618856 RAPGEF4Q8WZA2 1011 aa11.21□□□□□ -0.61
NEK3-209ENST00000618856 CYP27B1O15528 508 aa11.2□□□□□ -0.62
NEK3-209ENST00000618856 NKX1-1Q15270 411 aaPredicted RBP11.2□□□□□ -0.62
NEK3-209ENST00000618856 APBA3O96018 575 aa11.19□□□□□ -0.62
NEK3-209ENST00000618856 PPP2R1AP30153 589 aa11.19□□□□□ -0.62
NEK3-209ENST00000618856 EN1Q05925 392 aaPredicted RBP11.19□□□□□ -0.62
NEK3-209ENST00000618856 PCDH11XQ9BZA7 1347 aa11.18□□□□□ -0.62
NEK3-209ENST00000618856 PCDH11YQ9BZA8 1340 aa11.18□□□□□ -0.62
NEK3-209ENST00000618856 KCNQ2O43526 872 aa11.18□□□□□ -0.62
NEK3-209ENST00000618856 EZH2Q15910 746 aaKnown RBP11.18□□□□□ -0.62
NEK3-209ENST00000618856 DDX54Q8TDD1 881 aaKnown RBP11.18□□□□□ -0.62
NEK3-209ENST00000618856 DIAPH1O60610 1272 aaKnown RBP11.17□□□□□ -0.62
NEK3-209ENST00000618856 AEBP1Q8IUX7 1158 aa11.17□□□□□ -0.62
NEK3-209ENST00000618856 PROM2Q8N271 834 aa11.17□□□□□ -0.62
NEK3-209ENST00000618856 NUP188Q5SRE5 1749 aa11.17□□□□□ -0.62
NEK3-209ENST00000618856 DOT1LQ8TEK3 1739 aa11.17□□□□□ -0.62
NEK3-209ENST00000618856 BTAF1O14981 1849 aa11.16□□□□□ -0.62
NEK3-209ENST00000618856 TOGARAM1Q9Y4F4 1720 aa11.16□□□□□ -0.62
NEK3-209ENST00000618856 SRCAPQ6ZRS2 3230 aa11.16□□□□□ -0.62
NEK3-209ENST00000618856 DDX10Q13206 875 aaKnown RBP11.16□□□□□ -0.62
NEK3-209ENST00000618856 SULT6B1Q6IMI4 303 aa11.16□□□□□ -0.62
NEK3-209ENST00000618856 SPG7Q9UQ90 795 aa11.16□□□□□ -0.62
NEK3-209ENST00000618856 PHKG2P15735 406 aa11.15□□□□□ -0.62
NEK3-209ENST00000618856 AMOTQ4VCS5 1084 aa11.15□□□□□ -0.62
NEK3-209ENST00000618856 RALBP1Q15311 655 aa11.14□□□□□ -0.63
NEK3-209ENST00000618856 IFNL2Q8IZJ0 200 aa11.14□□□□□ -0.63
NEK3-209ENST00000618856 ACSBG1Q96GR2 724 aa11.14□□□□□ -0.63
NEK3-209ENST00000618856 PAPPAQ13219 1627 aa11.13□□□□□ -0.63
NEK3-209ENST00000618856 LY75O60449 1722 aa11.13□□□□□ -0.63
NEK3-209ENST00000618856 PRIM1P49642 420 aaKnown RBP11.13□□□□□ -0.63
NEK3-209ENST00000618856 PLEKHO1Q53GL0 409 aaPredicted RBP11.13□□□□□ -0.63
NEK3-209ENST00000618856 ADAMTS7Q9UKP4 1686 aa11.13□□□□□ -0.63
NEK3-209ENST00000618856 CACNB1Q02641 598 aaPredicted RBP11.12□□□□□ -0.63
NEK3-209ENST00000618856 TXNRD1Q16881 649 aa11.12□□□□□ -0.63
NEK3-209ENST00000618856 ITGB4P16144 1822 aa11.12□□□□□ -0.63
NEK3-209ENST00000618856 KDM6AO15550 1401 aaPredicted RBP11.11□□□□□ -0.63
NEK3-209ENST00000618856 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
NEK3-209ENST00000618856 CFAP53Q96M91 514 aa11.11□□□□□ -0.63
NEK3-209ENST00000618856 ERVV-2B6SEH9 535 aa11.1□□□□□ -0.63
NEK3-209ENST00000618856 HSP90AB1P08238 724 aaKnown RBP11.1□□□□□ -0.63
NEK3-209ENST00000618856 HMOX1P09601 288 aa11.1□□□□□ -0.63
NEK3-209ENST00000618856 CNGB1Q14028 1251 aaPredicted RBP11.1□□□□□ -0.63
NEK3-209ENST00000618856 DCAF5Q96JK2 942 aa11.1□□□□□ -0.63
NEK3-209ENST00000618856 RSPH6AQ9H0K4 717 aa11.1□□□□□ -0.63
NEK3-209ENST00000618856 MTHFSDQ2M296 383 aaKnown RBP11.09□□□□□ -0.63
NEK3-209ENST00000618856 AKAP4Q5JQC9 854 aa11.09□□□□□ -0.63
NEK3-209ENST00000618856 SLC27A3Q5K4L6 730 aa11.09□□□□□ -0.63
NEK3-209ENST00000618856 PPP4R3CPQ6ZMV5 832 aa11.09□□□□□ -0.63
NEK3-209ENST00000618856 PIGBQ92521 554 aa11.09□□□□□ -0.63
NEK3-209ENST00000618856 PRKRIP1Q9H875 184 aaPredicted RBP11.09□□□□□ -0.63
NEK3-209ENST00000618856 LRRC4BQ9NT99 713 aa11.09□□□□□ -0.63
NEK3-209ENST00000618856 MYBBP1AQ9BQG0 1328 aaKnown RBP11.09□□□□□ -0.63
NEK3-209ENST00000618856 MRC1P22897 1456 aa11.08□□□□□ -0.64
NEK3-209ENST00000618856 FCHSD2O94868 740 aa11.08□□□□□ -0.64
NEK3-209ENST00000618856 ZNF530Q6P9A1 599 aaPredicted RBP11.08□□□□□ -0.64
NEK3-209ENST00000618856 ANO8Q9HCE9 1232 aaPredicted RBP11.08□□□□□ -0.64
NEK3-209ENST00000618856 SCN11AQ9UI33 1791 aa11.08□□□□□ -0.64
NEK3-209ENST00000618856 ZNF831Q5JPB2 1677 aa11.08□□□□□ -0.64
NEK3-209ENST00000618856 U2SURPO15042 1029 aaKnown RBP11.07□□□□□ -0.64
NEK3-209ENST00000618856 NBPF14Q5TI25 921 aa11.07□□□□□ -0.64
NEK3-209ENST00000618856 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
NEK3-209ENST00000618856 SYTL4Q96C24 671 aaPredicted RBP11.07□□□□□ -0.64
NEK3-209ENST00000618856 PHACTR3Q96KR7 559 aa11.07□□□□□ -0.64
NEK3-209ENST00000618856 NUDCQ9Y266 331 aa11.07□□□□□ -0.64
NEK3-209ENST00000618856 CASZ1Q86V15 1759 aa11.06□□□□□ -0.64
NEK3-209ENST00000618856 R3HDM1Q15032 1099 aaKnown RBP11.06□□□□□ -0.64
NEK3-209ENST00000618856 AKT1S1Q96B36 256 aa11.06□□□□□ -0.64
NEK3-209ENST00000618856 PLEKHF1Q96S99 279 aa11.06□□□□□ -0.64
NEK3-209ENST00000618856 QSER1Q2KHR3 1735 aa11.06□□□□□ -0.64
NEK3-209ENST00000618856 LRP5O75197 1615 aa11.06□□□□□ -0.64
NEK3-209ENST00000618856 PALLDQ8WX93 1383 aa11.05□□□□□ -0.64
NEK3-209ENST00000618856 SLC15A2Q16348 729 aa11.05□□□□□ -0.64
NEK3-209ENST00000618856 C1orf141Q5JVX7 400 aa11.05□□□□□ -0.64
NEK3-209ENST00000618856 SMARCC1Q92922 1105 aaPredicted RBP11.05□□□□□ -0.64
NEK3-209ENST00000618856 ATG3Q9NT62 314 aa11.05□□□□□ -0.64
NEK3-209ENST00000618856 TMOD3Q9NYL9 352 aa11.05□□□□□ -0.64
NEK3-209ENST00000618856 CICQ96RK0 1608 aaPredicted RBP11.05□□□□□ -0.64
NEK3-209ENST00000618856 CEMIPQ8WUJ3 1361 aa11.04□□□□□ -0.64
NEK3-209ENST00000618856 PSDA5PKW4 1024 aaPredicted RBP11.04□□□□□ -0.64
NEK3-209ENST00000618856 U2AF1L5P0DN76 240 aaPredicted RBP11.04□□□□□ -0.64
NEK3-209ENST00000618856 HOXD11P31277 338 aaPredicted RBP11.04□□□□□ -0.64
NEK3-209ENST00000618856 PRKAR2BP31323 418 aa11.04□□□□□ -0.64
NEK3-209ENST00000618856 U2AF1Q01081 240 aaKnown RBP eCLIP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms