RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 AAMPQ13685 434 aa16.93■□□□□ 0.3
PTPN9-206ENST00000618819 JAKMIP1Q96N16 626 aaKnown RBP16.93■□□□□ 0.3
PTPN9-206ENST00000618819 ZSWIM4Q9H7M6 989 aa16.93■□□□□ 0.3
PTPN9-206ENST00000618819 RSPH14Q9UHP6 348 aa16.93■□□□□ 0.3
PTPN9-206ENST00000618819 SOGA3Q5TF21 947 aa16.92■□□□□ 0.3
PTPN9-206ENST00000618819 FBF1Q8TES7 1133 aa16.92■□□□□ 0.3
PTPN9-206ENST00000618819 TOP1P11387 765 aaKnown RBP16.92■□□□□ 0.3
PTPN9-206ENST00000618819 ERC1Q8IUD2 1116 aa16.92■□□□□ 0.3
PTPN9-206ENST00000618819 NOB1Q9ULX3 412 aaKnown RBP16.92■□□□□ 0.3
PTPN9-206ENST00000618819 CARMIL1Q5VZK9 1371 aa16.92■□□□□ 0.3
PTPN9-206ENST00000618819 SPECC1LQ69YQ0 1117 aa16.92■□□□□ 0.3
PTPN9-206ENST00000618819 CCDC144AA2RUR9 1427 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 BMP2KQ9NSY1 1161 aaPredicted RBP16.91■□□□□ 0.3
PTPN9-206ENST00000618819 USP25Q9UHP3 1055 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 FERMT3Q86UX7 667 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 CCDC57Q2TAC2 916 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.91■□□□□ 0.3
PTPN9-206ENST00000618819 CCDC6Q16204 474 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 C6orf163Q5TEZ5 329 aa16.91■□□□□ 0.3
PTPN9-206ENST00000618819 LARP1Q6PKG0 1096 aaKnown RBP16.9■□□□□ 0.3
PTPN9-206ENST00000618819 CACNA2D4Q7Z3S7 1137 aa16.9■□□□□ 0.3
PTPN9-206ENST00000618819 GNAI3P08754 354 aa16.9■□□□□ 0.3
PTPN9-206ENST00000618819 GCC1Q96CN9 775 aa16.9■□□□□ 0.3
PTPN9-206ENST00000618819 NUP88Q99567 741 aaPredicted RBP16.9■□□□□ 0.3
PTPN9-206ENST00000618819 CETN2P41208 172 aa16.9■□□□□ 0.3
PTPN9-206ENST00000618819 HSPA4P34932 840 aa16.9■□□□□ 0.3
PTPN9-206ENST00000618819 PAFAH1B1P43034 410 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 CWC27Q6UX04 472 aaKnown RBP16.89■□□□□ 0.29
PTPN9-206ENST00000618819 BCAR3O75815 825 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 CCDC96Q2M329 555 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 BLOC1S2Q6QNY1 142 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 HOOK3Q86VS8 718 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 ADAMTS8Q9UP79 889 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 CCDC158Q5M9N0 1113 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 APBB1IPQ7Z5R6 666 aaPredicted RBP16.89■□□□□ 0.29
PTPN9-206ENST00000618819 CEP57Q86XR8 500 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 MICALL1Q8N3F8 863 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 AKNAQ7Z591 1439 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 TTC16Q8NEE8 873 aa16.89■□□□□ 0.29
PTPN9-206ENST00000618819 PPM1FP49593 454 aaPredicted RBP16.88■□□□□ 0.29
PTPN9-206ENST00000618819 C11orf95C9JLR9 678 aaPredicted RBP16.88■□□□□ 0.29
PTPN9-206ENST00000618819 GNAI2P04899 355 aa16.88■□□□□ 0.29
PTPN9-206ENST00000618819 CNNM1Q9NRU3 951 aa16.88■□□□□ 0.29
PTPN9-206ENST00000618819 EXOSC9Q06265 439 aaKnown RBP16.88■□□□□ 0.29
PTPN9-206ENST00000618819 DRC1Q96MC2 740 aa16.88■□□□□ 0.29
PTPN9-206ENST00000618819 HOMER2Q9NSB8 354 aa16.88■□□□□ 0.29
PTPN9-206ENST00000618819 HYPKQ9NX55 129 aa16.88■□□□□ 0.29
PTPN9-206ENST00000618819 ANKRD18BA2A2Z9 1011 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 NAP1L3Q99457 506 aaPredicted RBP16.87■□□□□ 0.29
PTPN9-206ENST00000618819 POTEJP0CG39 1038 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 DHX57Q6P158 1386 aaKnown RBP16.87■□□□□ 0.29
PTPN9-206ENST00000618819 SEPT6Q14141 434 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 CCDC183Q5T5S1 534 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 CKAP2LQ8IYA6 745 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.87■□□□□ 0.29
PTPN9-206ENST00000618819 PRPF4BQ13523 1007 aaKnown RBP16.87■□□□□ 0.29
PTPN9-206ENST00000618819 FKBP15Q5T1M5 1219 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 MSL1Q68DK7 614 aa16.87■□□□□ 0.29
PTPN9-206ENST00000618819 RNF216Q9NWF9 866 aaPredicted RBP16.87■□□□□ 0.29
PTPN9-206ENST00000618819 CASTP20810 708 aaKnown RBP16.86■□□□□ 0.29
PTPN9-206ENST00000618819 MXRA7P84157 204 aa16.86■□□□□ 0.29
PTPN9-206ENST00000618819 NUTM2GQ5VZR2 741 aa16.86■□□□□ 0.29
PTPN9-206ENST00000618819 TDRD12Q587J7 1177 aaKnown RBP16.86■□□□□ 0.29
PTPN9-206ENST00000618819 CCDC30Q5VVM6 783 aa16.86■□□□□ 0.29
PTPN9-206ENST00000618819 PPP6R1Q9UPN7 881 aa16.86■□□□□ 0.29
PTPN9-206ENST00000618819 COMMD10Q9Y6G5 202 aa16.86■□□□□ 0.29
PTPN9-206ENST00000618819 PAIP2Q9BPZ3 127 aaKnown RBP16.86■□□□□ 0.29
PTPN9-206ENST00000618819 EFCAB2Q5VUJ9 269 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 TMC6Q7Z403 805 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 CEP112Q8N8E3 955 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 ZNF76P36508 570 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 CCDC83Q8IWF9 413 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 GGNBP2Q9H3C7 697 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 ANO10Q9NW15 660 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 CUX2O14529 1486 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 FKBP4Q02790 459 aaKnown RBP eCLIP16.85■□□□□ 0.29
PTPN9-206ENST00000618819 CEP135Q66GS9 1140 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 UBA5Q9GZZ9 404 aa16.85■□□□□ 0.29
PTPN9-206ENST00000618819 SNW1Q13573 536 aaKnown RBP16.85■□□□□ 0.29
PTPN9-206ENST00000618819 CDKL5O76039 1030 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 USP5P45974 858 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 NBPF1Q3BBV0 1214 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 SCLT1Q96NL6 688 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 PSME1Q06323 249 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 TSR2Q969E8 191 aaKnown RBP16.84■□□□□ 0.29
PTPN9-206ENST00000618819 CIZ1Q9ULV3 898 aaPredicted RBP16.84■□□□□ 0.29
PTPN9-206ENST00000618819 SPINK5Q9NQ38 1064 aaPredicted RBP16.84■□□□□ 0.29
PTPN9-206ENST00000618819 POTEB2H3BUK9 544 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 USO1O60763 962 aaKnown RBP16.84■□□□□ 0.29
PTPN9-206ENST00000618819 HSF2BPO75031 334 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 CTNNA2P26232 953 aa16.84■□□□□ 0.29
PTPN9-206ENST00000618819 NACAP1Q9BZK3 213 aa16.83■□□□□ 0.29
PTPN9-206ENST00000618819 FSD2A1L4K1 749 aa16.83■□□□□ 0.29
PTPN9-206ENST00000618819 TDO2P48775 406 aa16.83■□□□□ 0.29
PTPN9-206ENST00000618819 GRIPAP1Q4V328 841 aa16.83■□□□□ 0.29
PTPN9-206ENST00000618819 KRT222Q8N1A0 295 aa16.83■□□□□ 0.29
PTPN9-206ENST00000618819 DYNC1I1O14576 645 aa16.83■□□□□ 0.28
PTPN9-206ENST00000618819 CHD1LQ86WJ1 897 aa16.83■□□□□ 0.28
PTPN9-206ENST00000618819 ADCY5O95622 1261 aa16.83■□□□□ 0.28
PTPN9-206ENST00000618819 RAPGEF4Q8WZA2 1011 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms