RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 TRIM44Q96DX7 344 aaPredicted RBP25.2■■□□□ 1.62
NEK3-208ENST00000618534 AKAP12Q02952 1782 aa25.19■■□□□ 1.62
NEK3-208ENST00000618534 SMARCA5O60264 1052 aaPredicted RBP25.18■■□□□ 1.62
NEK3-208ENST00000618534 DDX49Q9Y6V7 483 aaKnown RBP25.18■■□□□ 1.62
NEK3-208ENST00000618534 APBB1O00213 710 aa25.18■■□□□ 1.62
NEK3-208ENST00000618534 SDSP20132 328 aa25.18■■□□□ 1.62
NEK3-208ENST00000618534 KLHL40Q2TBA0 621 aa25.18■■□□□ 1.62
NEK3-208ENST00000618534 SULT6B1Q6IMI4 303 aa25.18■■□□□ 1.62
NEK3-208ENST00000618534 RPAP2Q8IXW5 612 aaPredicted RBP25.18■■□□□ 1.62
NEK3-208ENST00000618534 ITSN1Q15811 1721 aa25.18■■□□□ 1.62
NEK3-208ENST00000618534 EIF4A2Q14240 407 aaKnown RBP25.17■■□□□ 1.62
NEK3-208ENST00000618534 RTL1A6NKG5 1358 aa25.17■■□□□ 1.62
NEK3-208ENST00000618534 MCM10Q7L590 875 aa25.17■■□□□ 1.62
NEK3-208ENST00000618534 CHL1O00533 1208 aa25.16■■□□□ 1.62
NEK3-208ENST00000618534 MEIS3Q99687 375 aa25.16■■□□□ 1.62
NEK3-208ENST00000618534 UBE2Q2Q8WVN8 375 aa25.15■■□□□ 1.62
NEK3-208ENST00000618534 PRR36Q9H6K5 1346 aa25.14■■□□□ 1.62
NEK3-208ENST00000618534 HAP1P54257 671 aaPredicted RBP25.14■■□□□ 1.61
NEK3-208ENST00000618534 MCTP1Q6DN14 999 aa25.14■■□□□ 1.61
NEK3-208ENST00000618534 IBTKQ9P2D0 1353 aaPredicted RBP25.13■■□□□ 1.61
NEK3-208ENST00000618534 CYP2E1P05181 493 aaPredicted RBP25.13■■□□□ 1.61
NEK3-208ENST00000618534 NUCB2P80303 420 aa25.13■■□□□ 1.61
NEK3-208ENST00000618534 PKP1Q13835 747 aa25.13■■□□□ 1.61
NEK3-208ENST00000618534 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
NEK3-208ENST00000618534 AGLP35573 1532 aa25.12■■□□□ 1.61
NEK3-208ENST00000618534 NASPP49321 788 aaPredicted RBP25.12■■□□□ 1.61
NEK3-208ENST00000618534 PTPRCP08575 1304 aa25.12■■□□□ 1.61
NEK3-208ENST00000618534 CASC1Q6TDU7 716 aa25.12■■□□□ 1.61
NEK3-208ENST00000618534 PPP6R1Q9UPN7 881 aa25.12■■□□□ 1.61
NEK3-208ENST00000618534 MLECQ14165 292 aa25.11■■□□□ 1.61
NEK3-208ENST00000618534 CCDC173Q0VFZ6 552 aa25.1■■□□□ 1.61
NEK3-208ENST00000618534 ZGPATQ8N5A5 531 aaKnown RBP25.08■■□□□ 1.61
NEK3-208ENST00000618534 PPP1R9BQ96SB3 815 aa25.08■■□□□ 1.61
NEK3-208ENST00000618534 TECPR2O15040 1411 aa25.08■■□□□ 1.61
NEK3-208ENST00000618534 ST18O60284 1047 aa25.08■■□□□ 1.61
NEK3-208ENST00000618534 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.08■■□□□ 1.61
NEK3-208ENST00000618534 LMBRD1Q9NUN5 540 aa25.08■■□□□ 1.61
NEK3-208ENST00000618534 SLC4A2P04920 1241 aa25.07■■□□□ 1.6
NEK3-208ENST00000618534 CAVIN1Q6NZI2 390 aaKnown RBP25.07■■□□□ 1.6
NEK3-208ENST00000618534 TTC21BQ7Z4L5 1316 aa25.06■■□□□ 1.6
NEK3-208ENST00000618534 REC8O95072 547 aa25.06■■□□□ 1.6
NEK3-208ENST00000618534 NCLP19338 710 aaKnown RBP25.06■■□□□ 1.6
NEK3-208ENST00000618534 CWC22Q9HCG8 908 aaKnown RBP25.06■■□□□ 1.6
NEK3-208ENST00000618534 CRB1P82279 1406 aa25.06■■□□□ 1.6
NEK3-208ENST00000618534 ZNF445P59923 1031 aa25.06■■□□□ 1.6
NEK3-208ENST00000618534 PEAK1Q9H792 1746 aa25.06■■□□□ 1.6
NEK3-208ENST00000618534 HSP90AB2PQ58FF8 381 aa25.05■■□□□ 1.6
NEK3-208ENST00000618534 SIRT1Q96EB6 747 aa25.05■■□□□ 1.6
NEK3-208ENST00000618534 MIS18AQ9NYP9 233 aa25.05■■□□□ 1.6
NEK3-208ENST00000618534 OVOS2A0A0J9YW53 1432 aa25.05■■□□□ 1.6
NEK3-208ENST00000618534 OVOS2Q6IE36 1432 aa25.05■■□□□ 1.6
NEK3-208ENST00000618534 ERC2O15083 957 aa25.04■■□□□ 1.6
NEK3-208ENST00000618534 RGPD1P0DJD0 1748 aa25.04■■□□□ 1.6
NEK3-208ENST00000618534 ZSCAN23Q3MJ62 389 aa25.04■■□□□ 1.6
NEK3-208ENST00000618534 HMMRO75330 724 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 FAM69CQ0P6D2 419 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 G2E3Q7L622 706 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 F6X3S4 739 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 SLC4A10Q6U841 1118 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 ANP32BQ92688 251 aaKnown RBP25.03■■□□□ 1.6
NEK3-208ENST00000618534 ZDHHC9Q9Y397 364 aa25.03■■□□□ 1.6
NEK3-208ENST00000618534 TSPOAP1O95153 1857 aa25.02■■□□□ 1.6
NEK3-208ENST00000618534 PDE1AP54750 535 aa25.01■■□□□ 1.59
NEK3-208ENST00000618534 ROBO2Q9HCK4 1378 aa25.01■■□□□ 1.59
NEK3-208ENST00000618534 ACEP12821 1306 aa25.01■■□□□ 1.59
NEK3-208ENST00000618534 SOX12O15370 315 aa25■■□□□ 1.59
NEK3-208ENST00000618534 FOXO3O43524 673 aa25■■□□□ 1.59
NEK3-208ENST00000618534 OSBPL3Q9H4L5 887 aa25■■□□□ 1.59
NEK3-208ENST00000618534 NUTM2FA1L443 756 aa25■■□□□ 1.59
NEK3-208ENST00000618534 PRPF40AO75400 957 aaKnown RBP25■■□□□ 1.59
NEK3-208ENST00000618534 NALCNQ8IZF0 1738 aa24.99■■□□□ 1.59
NEK3-208ENST00000618534 GPT2Q8TD30 523 aa24.98■■□□□ 1.59
NEK3-208ENST00000618534 RIMS1Q86UR5 1692 aaKnown RBP24.98■■□□□ 1.59
NEK3-208ENST00000618534 TSHZ3Q63HK5 1081 aa24.98■■□□□ 1.59
NEK3-208ENST00000618534 CHAMP1Q96JM3 812 aa24.98■■□□□ 1.59
NEK3-208ENST00000618534 TSPYL4Q9UJ04 414 aa24.98■■□□□ 1.59
NEK3-208ENST00000618534 CCT4P50991 539 aaKnown RBP24.97■■□□□ 1.59
NEK3-208ENST00000618534 ZSCAN30Q86W11 494 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 RBM27Q9P2N5 1060 aaKnown RBP24.97■■□□□ 1.59
NEK3-208ENST00000618534 EXOC6BQ9Y2D4 811 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 MAP3K19Q56UN5 1328 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 TOPAZ1Q8N9V7 1692 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 RBSNQ9H1K0 784 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 USP6P35125 1406 aa24.97■■□□□ 1.59
NEK3-208ENST00000618534 DIP2BQ9P265 1576 aa24.96■■□□□ 1.59
NEK3-208ENST00000618534 MTHFSDQ2M296 383 aaKnown RBP24.96■■□□□ 1.59
NEK3-208ENST00000618534 CYB5RLQ6IPT4 315 aa24.96■■□□□ 1.59
NEK3-208ENST00000618534 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.96■■□□□ 1.59
NEK3-208ENST00000618534 PRIM1P49642 420 aaKnown RBP24.94■■□□□ 1.58
NEK3-208ENST00000618534 NEK4P51957 841 aa24.94■■□□□ 1.58
NEK3-208ENST00000618534 ARHGEF10O15013 1369 aa24.94■■□□□ 1.58
NEK3-208ENST00000618534 USP31Q70CQ4 1352 aa24.94■■□□□ 1.58
NEK3-208ENST00000618534 GNAI2P04899 355 aa24.94■■□□□ 1.58
NEK3-208ENST00000618534 RTF1Q92541 710 aaKnown RBP24.94■■□□□ 1.58
NEK3-208ENST00000618534 SALL3Q9BXA9 1300 aa24.93■■□□□ 1.58
NEK3-208ENST00000618534 FOXD4L5Q5VV16 416 aaPredicted RBP24.93■■□□□ 1.58
NEK3-208ENST00000618534 FOXD4L4Q8WXT5 416 aaPredicted RBP24.93■■□□□ 1.58
NEK3-208ENST00000618534 TMX3Q96JJ7 454 aa24.93■■□□□ 1.58
NEK3-208ENST00000618534 PLEKHG3A1L390 1219 aa24.93■■□□□ 1.58
NEK3-208ENST00000618534 TUBGCP6Q96RT7 1819 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms