RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 STK3Q13188 491 aa10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 WASHC4Q2M389 1173 aa10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 SYNMO15061 1565 aa10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 NUTM2BA6NNL0 878 aaPredicted RBP10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 NUTM2EB1AL46 878 aaPredicted RBP10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 PRPF40AO75400 957 aaKnown RBP10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 ANXA1P04083 346 aa10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 NUTM2AQ8IVF1 878 aaPredicted RBP10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 PPP6R1Q9UPN7 881 aa10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 CLASRPQ8N2M8 674 aaKnown RBP10.82□□□□□ -0.68
PDLIM5-222ENST00000615540 TAF7Q15545 349 aaPredicted RBP10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 CAVIN1Q6NZI2 390 aaKnown RBP10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 STK11IPQ8N1F8 1099 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 ERVK-7P63135 1459 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 JARID2Q92833 1246 aaPredicted RBP10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 RSPH6AQ9H0K4 717 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 PTPRTO14522 1441 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 PLXNC1O60486 1568 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 HTATSF1O43719 755 aaKnown RBP10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 PHF14O94880 888 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 RABEP1Q15276 862 aa10.81□□□□□ -0.68
PDLIM5-222ENST00000615540 MTHFSDQ2M296 383 aaKnown RBP10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 CREBRFQ8IUR6 639 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 MEX3CQ5U5Q3 659 aaKnown RBP10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 LRRC59Q96AG4 307 aaKnown RBP10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 SEC24BO95487 1268 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 KIF6Q6ZMV9 814 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 C16orf71Q8IYS4 520 aaPredicted RBP10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 MYD88Q99836 296 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 TBC1D2Q9BYX2 928 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 UNC13BO14795 1591 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 NUCB2P80303 420 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 KIAA2012Q0VF49 1180 aa10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 LARP6Q9BRS8 491 aaKnown RBP10.8□□□□□ -0.68
PDLIM5-222ENST00000615540 HECW2Q9P2P5 1572 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 SF3A1Q15459 793 aaKnown RBP10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 SPHKAPQ2M3C7 1700 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 CHAF1AQ13111 956 aaPredicted RBP10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 RNF20Q5VTR2 975 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 IL16Q14005 1332 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 TBC1D9Q6ZT07 1266 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 KCNH5Q8NCM2 988 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 RNF214Q8ND24 703 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 MX1P20591 662 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 FLIIQ13045 1269 aa10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 RPAP2Q8IXW5 612 aaPredicted RBP10.79□□□□□ -0.68
PDLIM5-222ENST00000615540 CHRNA2Q15822 529 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 KRT28Q7Z3Y7 464 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 PIP4K2AP48426 406 aaPredicted RBP10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 NUCB1Q02818 461 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 TTC39AQ5SRH9 613 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 MEIS3Q99687 375 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 TRIM35Q9UPQ4 493 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 TET3O43151 1660 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 PIP4K2BP78356 416 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 CEP152O94986 1710 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 NFXL1Q6ZNB6 911 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 ANKRD24Q8TF21 1146 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 MAP3K2Q9Y2U5 619 aa10.78□□□□□ -0.68
PDLIM5-222ENST00000615540 PRDM11Q9NQV5 511 aa10.77□□□□□ -0.68
PDLIM5-222ENST00000615540 E9PCH4 1651 aa10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 VPS37DQ86XT2 251 aa10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 ERC1Q8IUD2 1116 aa10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 BICD2Q8TD16 824 aa10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 PTCD1O75127 700 aaKnown RBP10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 CEBPZQ03701 1054 aaKnown RBP10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 CHPF2Q9P2E5 772 aa10.77□□□□□ -0.69
PDLIM5-222ENST00000615540 ZFYVE9O95405 1425 aa10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 BCL11BQ9C0K0 894 aaPredicted RBP10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 PTPRCP08575 1304 aa10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 G3V3G9 751 aa10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 DCAF8Q5TAQ9 597 aa10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 ATP6V1DQ9Y5K8 247 aa10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 CDK11BP21127 795 aaKnown RBP10.76□□□□□ -0.69
PDLIM5-222ENST00000615540 IL13P35225 146 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 CABLES1Q8TDN4 633 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 CCDC8Q9H0W5 538 aaPredicted RBP10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 MSH6P52701 1360 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 KDM2BQ8NHM5 1336 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 VAMP4O75379 141 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 CNNM1Q9NRU3 951 aa10.75□□□□□ -0.69
PDLIM5-222ENST00000615540 JAKMIP1Q96N16 626 aaKnown RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 NEO1Q92859 1461 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 CASTP20810 708 aaKnown RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 HDAC1Q13547 482 aaPredicted RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 DNAAF4Q8WXU2 420 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 MYOM2P54296 1465 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 FIBPO43427 364 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 FKBP4Q02790 459 aaKnown RBP eCLIP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 RASSF8Q8NHQ8 419 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 CPLX1O14810 134 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 KCNA6P17658 529 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 NASPP49321 788 aaPredicted RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 TTC22Q5TAA0 569 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 DDX17Q92841 729 aaKnown RBP10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 MADDQ8WXG6 1647 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 SSFA2P28290 1259 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 SLC39A6Q13433 755 aa10.74□□□□□ -0.69
PDLIM5-222ENST00000615540 TBC1D32Q96NH3 1257 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms