RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	EYA1	Q99502	592 aa		12.04	□□□□□ -0.48
SSBP4-208	ENST00000600628	IGSF1	Q8N6C5	1336 aa		12.04	□□□□□ -0.48
SSBP4-208	ENST00000600628	BTAF1	O14981	1849 aa		12.04	□□□□□ -0.48
SSBP4-208	ENST00000600628	KDR	P35968	1356 aa		12.04	□□□□□ -0.48
SSBP4-208	ENST00000600628	COL3A1	P02461	1466 aa	Predicted RBP	12.03	□□□□□ -0.48
SSBP4-208	ENST00000600628	APBA3	O96018	575 aa		12.03	□□□□□ -0.48
SSBP4-208	ENST00000600628	MORC1	Q86VD1	984 aa		12.03	□□□□□ -0.48
SSBP4-208	ENST00000600628	EZH2	Q15910	746 aa	Known RBP	12.02	□□□□□ -0.49
SSBP4-208	ENST00000600628	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
SSBP4-208	ENST00000600628	TOGARAM1	Q9Y4F4	1720 aa		12.02	□□□□□ -0.49
SSBP4-208	ENST00000600628	DOT1L	Q8TEK3	1739 aa		12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	KCNQ2	O43526	872 aa		12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	TNNT2	P45379	298 aa	Predicted RBP	12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	PROM2	Q8N271	834 aa		12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	USHBP1	Q8N6Y0	703 aa		12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	ZCRB1	Q8TBF4	217 aa	Known RBP	12.01	□□□□□ -0.49
SSBP4-208	ENST00000600628	KAT6B	Q8WYB5	2073 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	CYP27B1	O15528	508 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	IL13	P35225	146 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	NKX1-1	Q15270	411 aa	Predicted RBP	12	□□□□□ -0.49
SSBP4-208	ENST00000600628	PAPPA	Q13219	1627 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	LY75	O60449	1722 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	ITGB4	P16144	1822 aa		12	□□□□□ -0.49
SSBP4-208	ENST00000600628	PPM1G	O15355	546 aa	Predicted RBP	11.98	□□□□□ -0.49
SSBP4-208	ENST00000600628	TAT	P17735	454 aa	Predicted RBP	11.98	□□□□□ -0.49
SSBP4-208	ENST00000600628	MTHFS	P49914	203 aa		11.98	□□□□□ -0.49
SSBP4-208	ENST00000600628	RAPGEF4	Q8WZA2	1011 aa		11.98	□□□□□ -0.49
SSBP4-208	ENST00000600628	PCDH11X	Q9BZA7	1347 aa		11.97	□□□□□ -0.49
SSBP4-208	ENST00000600628	PCDH11Y	Q9BZA8	1340 aa		11.97	□□□□□ -0.49
SSBP4-208	ENST00000600628	CC2D1B	Q5T0F9	858 aa	Known RBP	11.97	□□□□□ -0.49
SSBP4-208	ENST00000600628	PSD	A5PKW4	1024 aa	Predicted RBP	11.96	□□□□□ -0.49
SSBP4-208	ENST00000600628	ADAMTS7	Q9UKP4	1686 aa		11.96	□□□□□ -0.5
SSBP4-208	ENST00000600628	LRP5	O75197	1615 aa		11.96	□□□□□ -0.5
SSBP4-208	ENST00000600628	DDX54	Q8TDD1	881 aa	Known RBP	11.95	□□□□□ -0.5
SSBP4-208	ENST00000600628	CASZ1	Q86V15	1759 aa		11.95	□□□□□ -0.5
SSBP4-208	ENST00000600628	ZEB1	P37275	1124 aa	Predicted RBP	11.94	□□□□□ -0.5
SSBP4-208	ENST00000600628	R3HDM1	Q15032	1099 aa	Known RBP	11.94	□□□□□ -0.5
SSBP4-208	ENST00000600628	AEBP1	Q8IUX7	1158 aa		11.94	□□□□□ -0.5
SSBP4-208	ENST00000600628	ACSBG1	Q96GR2	724 aa		11.94	□□□□□ -0.5
SSBP4-208	ENST00000600628	QSER1	Q2KHR3	1735 aa		11.94	□□□□□ -0.5
SSBP4-208	ENST00000600628	VIRMA	Q69YN4	1812 aa	Known RBP	11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	SCN11A	Q9UI33	1791 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	PHKG2	P15735	406 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	PRIM1	P49642	420 aa	Known RBP	11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	TXNRD1	Q16881	649 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	NBPF14	Q5TI25	921 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	SPG7	Q9UQ90	795 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	TAF1L	Q8IZX4	1826 aa		11.93	□□□□□ -0.5
SSBP4-208	ENST00000600628	ZNF831	Q5JPB2	1677 aa		11.92	□□□□□ -0.5
SSBP4-208	ENST00000600628	PPP2R1A	P30153	589 aa		11.92	□□□□□ -0.5
SSBP4-208	ENST00000600628	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.92	□□□□□ -0.5
SSBP4-208	ENST00000600628	LRRC4B	Q9NT99	713 aa		11.92	□□□□□ -0.5
SSBP4-208	ENST00000600628	KDM6A	O15550	1401 aa	Predicted RBP	11.92	□□□□□ -0.5
SSBP4-208	ENST00000600628	COL24A1	Q17RW2	1714 aa		11.91	□□□□□ -0.5
SSBP4-208	ENST00000600628	DIAPH1	O60610	1272 aa	Known RBP	11.91	□□□□□ -0.5
SSBP4-208	ENST00000600628	TUBGCP6	Q96RT7	1819 aa		11.9	□□□□□ -0.5
SSBP4-208	ENST00000600628	AMOT	Q4VCS5	1084 aa		11.9	□□□□□ -0.5
SSBP4-208	ENST00000600628	SULT6B1	Q6IMI4	303 aa		11.9	□□□□□ -0.5
SSBP4-208	ENST00000600628	IFNL2	Q8IZJ0	200 aa		11.9	□□□□□ -0.5
SSBP4-208	ENST00000600628	CIC	Q96RK0	1608 aa	Predicted RBP	11.89	□□□□□ -0.51
SSBP4-208	ENST00000600628	MRC1	P22897	1456 aa		11.89	□□□□□ -0.51
SSBP4-208	ENST00000600628	C5	P01031	1676 aa		11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	ERVV-2	B6SEH9	535 aa		11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	SLC27A3	Q5K4L6	730 aa		11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	PIGB	Q92521	554 aa		11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	DCAF5	Q96JK2	942 aa		11.88	□□□□□ -0.51
SSBP4-208	ENST00000600628	SIPA1L3	O60292	1781 aa	Predicted RBP	11.87	□□□□□ -0.51
SSBP4-208	ENST00000600628	SLC15A2	Q16348	729 aa		11.87	□□□□□ -0.51
SSBP4-208	ENST00000600628	AKT1S1	Q96B36	256 aa		11.87	□□□□□ -0.51
SSBP4-208	ENST00000600628	SYTL4	Q96C24	671 aa	Predicted RBP	11.86	□□□□□ -0.51
SSBP4-208	ENST00000600628	RSPH6A	Q9H0K4	717 aa		11.86	□□□□□ -0.51
SSBP4-208	ENST00000600628	UBR3	Q6ZT12	1888 aa		11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	GOLGB1	Q14789	3259 aa	Known RBP	11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	HSP90AB1	P08238	724 aa	Known RBP	11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	DDX10	Q13206	875 aa	Known RBP	11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	RALBP1	Q15311	655 aa		11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	ZNF827	Q17R98	1081 aa		11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	UTRN	P46939	3433 aa		11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	COL5A3	P25940	1745 aa	Predicted RBP	11.85	□□□□□ -0.51
SSBP4-208	ENST00000600628	PALLD	Q8WX93	1383 aa		11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	HMOX1	P09601	288 aa		11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	MTHFSD	Q2M296	383 aa	Known RBP	11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	AKAP4	Q5JQC9	854 aa		11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	STK32B	Q9NY57	414 aa		11.84	□□□□□ -0.51
SSBP4-208	ENST00000600628	C4B	P0C0L5	1744 aa		11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	UBR2	Q8IWV8	1755 aa		11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	MPRIP	Q6WCQ1	1025 aa		11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	SMARCC1	Q92922	1105 aa	Predicted RBP	11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	ASAP1	Q9ULH1	1129 aa		11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	MYH14	Q7Z406	1995 aa	Known RBP	11.83	□□□□□ -0.52
SSBP4-208	ENST00000600628	CEMIP	Q8WUJ3	1361 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	FCHSD2	O94868	740 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	CFAP53	Q96M91	514 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	SLC4A9	Q96Q91	983 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	SGIP1	Q9BQI5	828 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	ATG3	Q9NT62	314 aa		11.82	□□□□□ -0.52
SSBP4-208	ENST00000600628	TMOD3	Q9NYL9	352 aa		11.82	□□□□□ -0.52

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