RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ANKRD24Q8TF21 1146 aa19.89■□□□□ 0.77
SHKBP1-218ENST00000598907 IGSF1Q8N6C5 1336 aa19.88■□□□□ 0.77
SHKBP1-218ENST00000598907 TTC21AQ8NDW8 1320 aa19.88■□□□□ 0.77
SHKBP1-218ENST00000598907 PRIM1P49642 420 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-218ENST00000598907 TNS4Q8IZW8 715 aa19.88■□□□□ 0.77
SHKBP1-218ENST00000598907 NSD2O96028 1365 aa19.87■□□□□ 0.77
SHKBP1-218ENST00000598907 ANKRD36BQ8N2N9 1353 aa19.87■□□□□ 0.77
SHKBP1-218ENST00000598907 CLSPNQ9HAW4 1339 aa19.86■□□□□ 0.77
SHKBP1-218ENST00000598907 HTRA3P83110 453 aa19.86■□□□□ 0.77
SHKBP1-218ENST00000598907 C5P01031 1676 aa19.86■□□□□ 0.77
SHKBP1-218ENST00000598907 KTN1Q86UP2 1357 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-218ENST00000598907 CCER1Q8TC90 406 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-218ENST00000598907 TOMM70O94826 608 aa19.83■□□□□ 0.77
SHKBP1-218ENST00000598907 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.83■□□□□ 0.77
SHKBP1-218ENST00000598907 MON2Q7Z3U7 1717 aa19.82■□□□□ 0.76
SHKBP1-218ENST00000598907 EVC2Q86UK5 1308 aa19.82■□□□□ 0.76
SHKBP1-218ENST00000598907 PRELPP51888 382 aa19.82■□□□□ 0.76
SHKBP1-218ENST00000598907 ZNF692Q9BU19 519 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-218ENST00000598907 USP47Q96K76 1375 aa19.82■□□□□ 0.76
SHKBP1-218ENST00000598907 CICQ96RK0 1608 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-218ENST00000598907 LTV1Q96GA3 475 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-218ENST00000598907 USP54Q70EL1 1684 aa19.8■□□□□ 0.76
SHKBP1-218ENST00000598907 NME9Q86XW9 330 aa19.79■□□□□ 0.76
SHKBP1-218ENST00000598907 KLRG1Q96E93 195 aa19.79■□□□□ 0.76
SHKBP1-218ENST00000598907 NMRK2Q9NPI5 230 aa19.79■□□□□ 0.76
SHKBP1-218ENST00000598907 FAM208AQ9UK61 1670 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-218ENST00000598907 TOGARAM1Q9Y4F4 1720 aa19.76■□□□□ 0.75
SHKBP1-218ENST00000598907 USP31Q70CQ4 1352 aa19.75■□□□□ 0.75
SHKBP1-218ENST00000598907 TAF1LQ8IZX4 1826 aa19.75■□□□□ 0.75
SHKBP1-218ENST00000598907 PHF14O94880 888 aa19.75■□□□□ 0.75
SHKBP1-218ENST00000598907 SMIM5Q71RC9 77 aa19.74■□□□□ 0.75
SHKBP1-218ENST00000598907 JMYQ8N9B5 988 aa19.74■□□□□ 0.75
SHKBP1-218ENST00000598907 FLAD1Q8NFF5 587 aa19.74■□□□□ 0.75
SHKBP1-218ENST00000598907 C4BP0C0L5 1744 aa19.73■□□□□ 0.75
SHKBP1-218ENST00000598907 MEGF6O75095 1541 aa19.73■□□□□ 0.75
SHKBP1-218ENST00000598907 C16orf71Q8IYS4 520 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-218ENST00000598907 SIN3AQ96ST3 1273 aa19.73■□□□□ 0.75
SHKBP1-218ENST00000598907 AMIGO3Q86WK7 504 aa19.72■□□□□ 0.75
SHKBP1-218ENST00000598907 RGPD2P0DJD1 1756 aa19.72■□□□□ 0.75
SHKBP1-218ENST00000598907 ZCRB1Q8TBF4 217 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-218ENST00000598907 AK7Q96M32 723 aa19.71■□□□□ 0.75
SHKBP1-218ENST00000598907 PALLDQ8WX93 1383 aa19.7■□□□□ 0.74
SHKBP1-218ENST00000598907 RBM46Q8TBY0 533 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-218ENST00000598907 BCS1LQ9Y276 419 aa19.69■□□□□ 0.74
SHKBP1-218ENST00000598907 UBR3Q6ZT12 1888 aa19.69■□□□□ 0.74
SHKBP1-218ENST00000598907 SBNO2Q9Y2G9 1366 aa19.69■□□□□ 0.74
SHKBP1-218ENST00000598907 PXDNLA1KZ92 1463 aa19.68■□□□□ 0.74
SHKBP1-218ENST00000598907 N4BP2Q86UW6 1770 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-218ENST00000598907 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-218ENST00000598907 ARHGAP27Q6ZUM4 889 aa19.67■□□□□ 0.74
SHKBP1-218ENST00000598907 KIAA1551Q9HCM1 1747 aa19.67■□□□□ 0.74
SHKBP1-218ENST00000598907 IP6K1Q92551 441 aa19.66■□□□□ 0.74
SHKBP1-218ENST00000598907 CD163L1Q9NR16 1453 aa19.66■□□□□ 0.74
SHKBP1-218ENST00000598907 HSPA1AP0DMV8 641 aaKnown RBP19.64■□□□□ 0.73
SHKBP1-218ENST00000598907 HSPA1BP0DMV9 641 aaKnown RBP19.64■□□□□ 0.73
SHKBP1-218ENST00000598907 NEUROD1Q13562 356 aa19.64■□□□□ 0.73
SHKBP1-218ENST00000598907 KCPQ6ZWJ8 1503 aa19.64■□□□□ 0.73
SHKBP1-218ENST00000598907 PKD1L3Q7Z443 1732 aa19.64■□□□□ 0.73
SHKBP1-218ENST00000598907 NSD3Q9BZ95 1437 aa19.63■□□□□ 0.73
SHKBP1-218ENST00000598907 FSTL1Q12841 308 aa19.63■□□□□ 0.73
SHKBP1-218ENST00000598907 MPRIPQ6WCQ1 1025 aa19.63■□□□□ 0.73
SHKBP1-218ENST00000598907 USHBP1Q8N6Y0 703 aa19.62■□□□□ 0.73
SHKBP1-218ENST00000598907 TMC1Q8TDI8 760 aa19.62■□□□□ 0.73
SHKBP1-218ENST00000598907 TIMELESSQ9UNS1 1208 aa19.62■□□□□ 0.73
SHKBP1-218ENST00000598907 PCNTO95613 3336 aa19.62■□□□□ 0.73
SHKBP1-218ENST00000598907 KIF13BQ9NQT8 1826 aa19.61■□□□□ 0.73
SHKBP1-218ENST00000598907 A0A0G2JLW4 131 aa19.61■□□□□ 0.73
SHKBP1-218ENST00000598907 SLC34A2O95436 690 aa19.61■□□□□ 0.73
SHKBP1-218ENST00000598907 C9orf131Q5VYM1 1079 aa19.61■□□□□ 0.73
SHKBP1-218ENST00000598907 EDC4Q6P2E9 1401 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-218ENST00000598907 PLEKHG2Q9H7P9 1386 aa19.6■□□□□ 0.73
SHKBP1-218ENST00000598907 MMP10P09238 476 aa19.6■□□□□ 0.73
SHKBP1-218ENST00000598907 HDGFL2Q7Z4V5 671 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-218ENST00000598907 FCHSD2O94868 740 aa19.59■□□□□ 0.73
SHKBP1-218ENST00000598907 HOXC9P31274 260 aa19.59■□□□□ 0.73
SHKBP1-218ENST00000598907 MAP3K19Q56UN5 1328 aa19.58■□□□□ 0.73
SHKBP1-218ENST00000598907 SSFA2P28290 1259 aa19.58■□□□□ 0.72
SHKBP1-218ENST00000598907 AMPHP49418 695 aa19.58■□□□□ 0.72
SHKBP1-218ENST00000598907 TNRC6CQ9HCJ0 1690 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-218ENST00000598907 ITGB4P16144 1822 aa19.58■□□□□ 0.72
SHKBP1-218ENST00000598907 ROCK2O75116 1388 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 KDM2BQ8NHM5 1336 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 GNPATO15228 680 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 FBLN1P23142 703 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 HMGB2P26583 209 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 RAPGEF4Q8WZA2 1011 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 RRAGCQ9HB90 399 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 C10orf71Q711Q0 1435 aa19.57■□□□□ 0.72
SHKBP1-218ENST00000598907 LINC00116Q8NCU8 138 aa19.56■□□□□ 0.72
SHKBP1-218ENST00000598907 A0A1W2PP64 1363 aa19.56■□□□□ 0.72
SHKBP1-218ENST00000598907 TONSLQ96HA7 1378 aa19.56■□□□□ 0.72
SHKBP1-218ENST00000598907 PCDH11XQ9BZA7 1347 aa19.55■□□□□ 0.72
SHKBP1-218ENST00000598907 PCDH11YQ9BZA8 1340 aa19.55■□□□□ 0.72
SHKBP1-218ENST00000598907 DPEP1P16444 411 aa19.55■□□□□ 0.72
SHKBP1-218ENST00000598907 SMARCC1Q92922 1105 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-218ENST00000598907 L3MBTL2Q969R5 705 aa19.55■□□□□ 0.72
SHKBP1-218ENST00000598907 BRCA1P38398 1863 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 TGFB2P61812 414 aa19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 NBPF6Q5VWK0 638 aa19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 SMC1BQ8NDV3 1235 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms