RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 PARD3Q8TEW0 1356 aa23.98■■□□□ 1.43
USHBP1-209ENST00000598570 BAG6P46379 1132 aa23.97■■□□□ 1.43
USHBP1-209ENST00000598570 PKD1L3Q7Z443 1732 aa23.97■■□□□ 1.43
USHBP1-209ENST00000598570 RAPGEF4Q8WZA2 1011 aa23.97■■□□□ 1.43
USHBP1-209ENST00000598570 RGPD3A6NKT7 1758 aaPredicted RBP23.96■■□□□ 1.43
USHBP1-209ENST00000598570 RGPD4Q7Z3J3 1758 aa23.96■■□□□ 1.43
USHBP1-209ENST00000598570 PLSCR1O15162 318 aa23.96■■□□□ 1.43
USHBP1-209ENST00000598570 KDRP35968 1356 aa23.95■■□□□ 1.42
USHBP1-209ENST00000598570 TATP17735 454 aaPredicted RBP23.95■■□□□ 1.42
USHBP1-209ENST00000598570 PTF1AQ7RTS3 328 aa23.94■■□□□ 1.42
USHBP1-209ENST00000598570 NHSQ6T4R5 1651 aa23.94■■□□□ 1.42
USHBP1-209ENST00000598570 COL3A1P02461 1466 aaPredicted RBP23.94■■□□□ 1.42
USHBP1-209ENST00000598570 NKX1-1Q15270 411 aaPredicted RBP23.93■■□□□ 1.42
USHBP1-209ENST00000598570 APBA3O96018 575 aa23.92■■□□□ 1.42
USHBP1-209ENST00000598570 EN1Q05925 392 aaPredicted RBP23.92■■□□□ 1.42
USHBP1-209ENST00000598570 CYP27B1O15528 508 aa23.9■■□□□ 1.42
USHBP1-209ENST00000598570 KCNQ2O43526 872 aa23.9■■□□□ 1.42
USHBP1-209ENST00000598570 DDX54Q8TDD1 881 aaKnown RBP23.9■■□□□ 1.42
USHBP1-209ENST00000598570 RREB1Q92766 1687 aa23.89■■□□□ 1.42
USHBP1-209ENST00000598570 PCDH11XQ9BZA7 1347 aa23.88■■□□□ 1.41
USHBP1-209ENST00000598570 PCDH11YQ9BZA8 1340 aa23.88■■□□□ 1.41
USHBP1-209ENST00000598570 PPP2R1AP30153 589 aa23.88■■□□□ 1.41
USHBP1-209ENST00000598570 EZH2Q15910 746 aaKnown RBP23.87■■□□□ 1.41
USHBP1-209ENST00000598570 PROM2Q8N271 834 aa23.87■■□□□ 1.41
USHBP1-209ENST00000598570 SPG7Q9UQ90 795 aa23.86■■□□□ 1.41
USHBP1-209ENST00000598570 DIAPH1O60610 1272 aaKnown RBP23.85■■□□□ 1.41
USHBP1-209ENST00000598570 BTAF1O14981 1849 aa23.83■■□□□ 1.41
USHBP1-209ENST00000598570 DDX10Q13206 875 aaKnown RBP23.83■■□□□ 1.41
USHBP1-209ENST00000598570 AEBP1Q8IUX7 1158 aa23.83■■□□□ 1.41
USHBP1-209ENST00000598570 AMOTQ4VCS5 1084 aa23.82■■□□□ 1.4
USHBP1-209ENST00000598570 SULT6B1Q6IMI4 303 aa23.82■■□□□ 1.4
USHBP1-209ENST00000598570 NUP188Q5SRE5 1749 aa23.81■■□□□ 1.4
USHBP1-209ENST00000598570 PHKG2P15735 406 aa23.81■■□□□ 1.4
USHBP1-209ENST00000598570 PRIM1P49642 420 aaKnown RBP23.81■■□□□ 1.4
USHBP1-209ENST00000598570 ACSBG1Q96GR2 724 aa23.81■■□□□ 1.4
USHBP1-209ENST00000598570 DOT1LQ8TEK3 1739 aa23.8■■□□□ 1.4
USHBP1-209ENST00000598570 KAT6BQ8WYB5 2073 aa23.8■■□□□ 1.4
USHBP1-209ENST00000598570 RALBP1Q15311 655 aa23.79■■□□□ 1.4
USHBP1-209ENST00000598570 PLEKHO1Q53GL0 409 aaPredicted RBP23.79■■□□□ 1.4
USHBP1-209ENST00000598570 IFNL2Q8IZJ0 200 aa23.79■■□□□ 1.4
USHBP1-209ENST00000598570 TOGARAM1Q9Y4F4 1720 aa23.78■■□□□ 1.4
USHBP1-209ENST00000598570 ITGB4P16144 1822 aa23.76■■□□□ 1.39
USHBP1-209ENST00000598570 TXNRD1Q16881 649 aa23.76■■□□□ 1.39
USHBP1-209ENST00000598570 CFAP53Q96M91 514 aa23.75■■□□□ 1.39
USHBP1-209ENST00000598570 LY75O60449 1722 aa23.75■■□□□ 1.39
USHBP1-209ENST00000598570 ZNF316A6NFI3 1004 aaPredicted RBP23.72■■□□□ 1.39
USHBP1-209ENST00000598570 ERVV-2B6SEH9 535 aa23.72■■□□□ 1.39
USHBP1-209ENST00000598570 HSP90AB1P08238 724 aaKnown RBP23.72■■□□□ 1.39
USHBP1-209ENST00000598570 CNGB1Q14028 1251 aaPredicted RBP23.72■■□□□ 1.39
USHBP1-209ENST00000598570 SLC27A3Q5K4L6 730 aa23.72■■□□□ 1.39
USHBP1-209ENST00000598570 DCAF5Q96JK2 942 aa23.72■■□□□ 1.39
USHBP1-209ENST00000598570 PAPPAQ13219 1627 aa23.71■■□□□ 1.39
USHBP1-209ENST00000598570 ADAMTS7Q9UKP4 1686 aa23.7■■□□□ 1.39
USHBP1-209ENST00000598570 HMOX1P09601 288 aa23.7■■□□□ 1.38
USHBP1-209ENST00000598570 PIGBQ92521 554 aa23.7■■□□□ 1.38
USHBP1-209ENST00000598570 LRRC4BQ9NT99 713 aa23.7■■□□□ 1.38
USHBP1-209ENST00000598570 KDM6AO15550 1401 aaPredicted RBP23.69■■□□□ 1.38
USHBP1-209ENST00000598570 ZNF530Q6P9A1 599 aaPredicted RBP23.69■■□□□ 1.38
USHBP1-209ENST00000598570 RSPH6AQ9H0K4 717 aa23.69■■□□□ 1.38
USHBP1-209ENST00000598570 FCHSD2O94868 740 aa23.68■■□□□ 1.38
USHBP1-209ENST00000598570 AKAP4Q5JQC9 854 aa23.68■■□□□ 1.38
USHBP1-209ENST00000598570 NBPF14Q5TI25 921 aa23.68■■□□□ 1.38
USHBP1-209ENST00000598570 NUDCQ9Y266 331 aa23.68■■□□□ 1.38
USHBP1-209ENST00000598570 SCN11AQ9UI33 1791 aa23.66■■□□□ 1.38
USHBP1-209ENST00000598570 MTHFSDQ2M296 383 aaKnown RBP23.66■■□□□ 1.38
USHBP1-209ENST00000598570 SYTL4Q96C24 671 aaPredicted RBP23.66■■□□□ 1.38
USHBP1-209ENST00000598570 PRKRIP1Q9H875 184 aaPredicted RBP23.66■■□□□ 1.38
USHBP1-209ENST00000598570 MPRIPQ6WCQ1 1025 aa23.65■■□□□ 1.38
USHBP1-209ENST00000598570 ANO8Q9HCE9 1232 aaPredicted RBP23.65■■□□□ 1.38
USHBP1-209ENST00000598570 SRCAPQ6ZRS2 3230 aa23.65■■□□□ 1.38
USHBP1-209ENST00000598570 MYBBP1AQ9BQG0 1328 aaKnown RBP23.64■■□□□ 1.38
USHBP1-209ENST00000598570 U2SURPO15042 1029 aaKnown RBP23.64■■□□□ 1.37
USHBP1-209ENST00000598570 SMARCC1Q92922 1105 aaPredicted RBP23.64■■□□□ 1.37
USHBP1-209ENST00000598570 R3HDM1Q15032 1099 aaKnown RBP23.63■■□□□ 1.37
USHBP1-209ENST00000598570 C1orf141Q5JVX7 400 aa23.63■■□□□ 1.37
USHBP1-209ENST00000598570 AKT1S1Q96B36 256 aa23.62■■□□□ 1.37
USHBP1-209ENST00000598570 PHACTR3Q96KR7 559 aa23.62■■□□□ 1.37
USHBP1-209ENST00000598570 ZNF831Q5JPB2 1677 aa23.62■■□□□ 1.37
USHBP1-209ENST00000598570 HMGB2P26583 209 aaKnown RBP23.61■■□□□ 1.37
USHBP1-209ENST00000598570 SLC15A2Q16348 729 aa23.61■■□□□ 1.37
USHBP1-209ENST00000598570 ATG3Q9NT62 314 aa23.61■■□□□ 1.37
USHBP1-209ENST00000598570 TMOD3Q9NYL9 352 aa23.61■■□□□ 1.37
USHBP1-209ENST00000598570 MRC1P22897 1456 aa23.61■■□□□ 1.37
USHBP1-209ENST00000598570 U2AF1L5P0DN76 240 aaPredicted RBP23.6■■□□□ 1.37
USHBP1-209ENST00000598570 U2AF1Q01081 240 aaKnown RBP eCLIP23.6■■□□□ 1.37
USHBP1-209ENST00000598570 PALLDQ8WX93 1383 aa23.6■■□□□ 1.37
USHBP1-209ENST00000598570 PSDA5PKW4 1024 aaPredicted RBP23.59■■□□□ 1.37
USHBP1-209ENST00000598570 PRKAR2BP31323 418 aa23.59■■□□□ 1.37
USHBP1-209ENST00000598570 GAS2L2Q8NHY3 880 aa23.59■■□□□ 1.37
USHBP1-209ENST00000598570 PLEKHF1Q96S99 279 aa23.59■■□□□ 1.37
USHBP1-209ENST00000598570 ASAP1Q9ULH1 1129 aa23.59■■□□□ 1.37
USHBP1-209ENST00000598570 QSER1Q2KHR3 1735 aa23.59■■□□□ 1.37
USHBP1-209ENST00000598570 CASZ1Q86V15 1759 aa23.58■■□□□ 1.37
USHBP1-209ENST00000598570 RNMTO43148 476 aaKnown RBP23.58■■□□□ 1.37
USHBP1-209ENST00000598570 LGR6Q9HBX8 967 aa23.58■■□□□ 1.37
USHBP1-209ENST00000598570 TAF1LQ8IZX4 1826 aa23.58■■□□□ 1.37
USHBP1-209ENST00000598570 VIRMAQ69YN4 1812 aaKnown RBP23.57■■□□□ 1.36
USHBP1-209ENST00000598570 LRP5O75197 1615 aa23.56■■□□□ 1.36
USHBP1-209ENST00000598570 CEMIPQ8WUJ3 1361 aa23.56■■□□□ 1.36
USHBP1-209ENST00000598570 NFATC2IPQ8NCF5 419 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms