RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 EIF4A2Q14240 407 aaKnown RBP22.03■■□□□ 1.12
TRIM28-213ENST00000598355 CAMKK2Q96RR4 588 aa22.03■■□□□ 1.12
TRIM28-213ENST00000598355 EN1Q05925 392 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-213ENST00000598355 EYA1Q99502 592 aa22.02■■□□□ 1.12
TRIM28-213ENST00000598355 BCL11BQ9C0K0 894 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-213ENST00000598355 TOGARAM1Q9Y4F4 1720 aa22.02■■□□□ 1.12
TRIM28-213ENST00000598355 IGSF1Q8N6C5 1336 aa22.02■■□□□ 1.12
TRIM28-213ENST00000598355 RAPGEF4Q8WZA2 1011 aa22■■□□□ 1.11
TRIM28-213ENST00000598355 COL3A1P02461 1466 aaPredicted RBP22■■□□□ 1.11
TRIM28-213ENST00000598355 APBA3O96018 575 aa21.99■■□□□ 1.11
TRIM28-213ENST00000598355 PTF1AQ7RTS3 328 aa21.99■■□□□ 1.11
TRIM28-213ENST00000598355 ZCRB1Q8TBF4 217 aaKnown RBP21.99■■□□□ 1.11
TRIM28-213ENST00000598355 EZH2Q15910 746 aaKnown RBP21.98■■□□□ 1.11
TRIM28-213ENST00000598355 ITGB4P16144 1822 aa21.98■■□□□ 1.11
TRIM28-213ENST00000598355 PLSCR1O15162 318 aa21.97■■□□□ 1.11
TRIM28-213ENST00000598355 TATP17735 454 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-213ENST00000598355 CC2D1BQ5T0F9 858 aaKnown RBP21.97■■□□□ 1.11
TRIM28-213ENST00000598355 KDRP35968 1356 aa21.97■■□□□ 1.11
TRIM28-213ENST00000598355 LY75O60449 1722 aa21.97■■□□□ 1.11
TRIM28-213ENST00000598355 PCDH11XQ9BZA7 1347 aa21.96■■□□□ 1.11
TRIM28-213ENST00000598355 PCDH11YQ9BZA8 1340 aa21.96■■□□□ 1.11
TRIM28-213ENST00000598355 PAPPAQ13219 1627 aa21.95■■□□□ 1.1
TRIM28-213ENST00000598355 KCNQ2O43526 872 aa21.94■■□□□ 1.1
TRIM28-213ENST00000598355 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.94■■□□□ 1.1
TRIM28-213ENST00000598355 IL13P35225 146 aa21.93■■□□□ 1.1
TRIM28-213ENST00000598355 MTHFSP49914 203 aa21.93■■□□□ 1.1
TRIM28-213ENST00000598355 DDX54Q8TDD1 881 aaKnown RBP21.93■■□□□ 1.1
TRIM28-213ENST00000598355 ZEB1P37275 1124 aaPredicted RBP21.92■■□□□ 1.1
TRIM28-213ENST00000598355 CYP27B1O15528 508 aa21.91■■□□□ 1.1
TRIM28-213ENST00000598355 ACSBG1Q96GR2 724 aa21.9■■□□□ 1.1
TRIM28-213ENST00000598355 LRP5O75197 1615 aa21.9■■□□□ 1.1
TRIM28-213ENST00000598355 VIRMAQ69YN4 1812 aaKnown RBP21.9■■□□□ 1.1
TRIM28-213ENST00000598355 PROM2Q8N271 834 aa21.88■■□□□ 1.09
TRIM28-213ENST00000598355 SRCAPQ6ZRS2 3230 aa21.87■■□□□ 1.09
TRIM28-213ENST00000598355 NKX1-1Q15270 411 aaPredicted RBP21.87■■□□□ 1.09
TRIM28-213ENST00000598355 CASZ1Q86V15 1759 aa21.87■■□□□ 1.09
TRIM28-213ENST00000598355 SPG7Q9UQ90 795 aa21.86■■□□□ 1.09
TRIM28-213ENST00000598355 QSER1Q2KHR3 1735 aa21.86■■□□□ 1.09
TRIM28-213ENST00000598355 SCN11AQ9UI33 1791 aa21.85■■□□□ 1.09
TRIM28-213ENST00000598355 AEBP1Q8IUX7 1158 aa21.85■■□□□ 1.09
TRIM28-213ENST00000598355 TAF1LQ8IZX4 1826 aa21.84■■□□□ 1.09
TRIM28-213ENST00000598355 ADAMTS7Q9UKP4 1686 aa21.84■■□□□ 1.09
TRIM28-213ENST00000598355 PRIM1P49642 420 aaKnown RBP21.83■■□□□ 1.09
TRIM28-213ENST00000598355 TXNRD1Q16881 649 aa21.83■■□□□ 1.09
TRIM28-213ENST00000598355 TUBGCP6Q96RT7 1819 aa21.83■■□□□ 1.08
TRIM28-213ENST00000598355 PHKG2P15735 406 aa21.82■■□□□ 1.08
TRIM28-213ENST00000598355 DIAPH1O60610 1272 aaKnown RBP21.81■■□□□ 1.08
TRIM28-213ENST00000598355 PPP2R1AP30153 589 aa21.81■■□□□ 1.08
TRIM28-213ENST00000598355 SULT6B1Q6IMI4 303 aa21.81■■□□□ 1.08
TRIM28-213ENST00000598355 C5P01031 1676 aa21.8■■□□□ 1.08
TRIM28-213ENST00000598355 IFNL2Q8IZJ0 200 aa21.8■■□□□ 1.08
TRIM28-213ENST00000598355 ANO8Q9HCE9 1232 aaPredicted RBP21.8■■□□□ 1.08
TRIM28-213ENST00000598355 KDM6AO15550 1401 aaPredicted RBP21.8■■□□□ 1.08
TRIM28-213ENST00000598355 AMOTQ4VCS5 1084 aa21.79■■□□□ 1.08
TRIM28-213ENST00000598355 ZNF831Q5JPB2 1677 aa21.79■■□□□ 1.08
TRIM28-213ENST00000598355 PSDA5PKW4 1024 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-213ENST00000598355 R3HDM1Q15032 1099 aaKnown RBP21.78■■□□□ 1.08
TRIM28-213ENST00000598355 CNGB1Q14028 1251 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-213ENST00000598355 PLEKHO1Q53GL0 409 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-213ENST00000598355 SYTL4Q96C24 671 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-213ENST00000598355 NBPF14Q5TI25 921 aa21.76■■□□□ 1.07
TRIM28-213ENST00000598355 LRRC4BQ9NT99 713 aa21.76■■□□□ 1.07
TRIM28-213ENST00000598355 MRC1P22897 1456 aa21.76■■□□□ 1.07
TRIM28-213ENST00000598355 SLC27A3Q5K4L6 730 aa21.75■■□□□ 1.07
TRIM28-213ENST00000598355 CICQ96RK0 1608 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-213ENST00000598355 ZNF530Q6P9A1 599 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-213ENST00000598355 HSP90AB1P08238 724 aaKnown RBP21.73■■□□□ 1.07
TRIM28-213ENST00000598355 HMOX1P09601 288 aa21.73■■□□□ 1.07
TRIM28-213ENST00000598355 DDX10Q13206 875 aaKnown RBP21.73■■□□□ 1.07
TRIM28-213ENST00000598355 DCAF5Q96JK2 942 aa21.73■■□□□ 1.07
TRIM28-213ENST00000598355 CFAP53Q96M91 514 aa21.73■■□□□ 1.07
TRIM28-213ENST00000598355 PALLDQ8WX93 1383 aa21.73■■□□□ 1.07
TRIM28-213ENST00000598355 COL24A1Q17RW2 1714 aa21.72■■□□□ 1.07
TRIM28-213ENST00000598355 PIGBQ92521 554 aa21.72■■□□□ 1.07
TRIM28-213ENST00000598355 SIPA1L3O60292 1781 aaPredicted RBP21.71■■□□□ 1.07
TRIM28-213ENST00000598355 COL5A3P25940 1745 aaPredicted RBP21.7■■□□□ 1.06
TRIM28-213ENST00000598355 ERVV-2B6SEH9 535 aa21.7■■□□□ 1.06
TRIM28-213ENST00000598355 SLC15A2Q16348 729 aa21.7■■□□□ 1.06
TRIM28-213ENST00000598355 MPRIPQ6WCQ1 1025 aa21.7■■□□□ 1.06
TRIM28-213ENST00000598355 C4BP0C0L5 1744 aa21.69■■□□□ 1.06
TRIM28-213ENST00000598355 UBR3Q6ZT12 1888 aa21.69■■□□□ 1.06
TRIM28-213ENST00000598355 RALBP1Q15311 655 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 AKAP4Q5JQC9 854 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 C1orf141Q5JVX7 400 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 AKT1S1Q96B36 256 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 RSPH6AQ9H0K4 717 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 TMOD3Q9NYL9 352 aa21.68■■□□□ 1.06
TRIM28-213ENST00000598355 U2SURPO15042 1029 aaKnown RBP21.67■■□□□ 1.06
TRIM28-213ENST00000598355 ZNF827Q17R98 1081 aa21.67■■□□□ 1.06
TRIM28-213ENST00000598355 SMARCC1Q92922 1105 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-213ENST00000598355 STK32BQ9NY57 414 aa21.67■■□□□ 1.06
TRIM28-213ENST00000598355 UBR2Q8IWV8 1755 aa21.66■■□□□ 1.06
TRIM28-213ENST00000598355 CCNL1Q9UK58 526 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-213ENST00000598355 DLG5Q8TDM6 1919 aa21.65■■□□□ 1.06
TRIM28-213ENST00000598355 MTHFSDQ2M296 383 aaKnown RBP21.65■■□□□ 1.06
TRIM28-213ENST00000598355 NUDCQ9Y266 331 aa21.65■■□□□ 1.06
TRIM28-213ENST00000598355 TJP1Q07157 1748 aa21.64■■□□□ 1.06
TRIM28-213ENST00000598355 KCNQ4P56696 695 aa21.63■■□□□ 1.05
TRIM28-213ENST00000598355 ASAP1Q9ULH1 1129 aa21.63■■□□□ 1.05
TRIM28-213ENST00000598355 MYBBP1AQ9BQG0 1328 aaKnown RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms