RNA–Protein interactions for RNA: ENST00000597724.6

SSBP4-204, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-204ENST00000597724 PTF1AQ7RTS3 328 aa22.74■■□□□ 1.23
SSBP4-204ENST00000597724 EZH2Q15910 746 aaKnown RBP22.73■■□□□ 1.23
SSBP4-204ENST00000597724 SHANK3Q9BYB0 1731 aa22.72■■□□□ 1.23
SSBP4-204ENST00000597724 CNGB1Q14028 1251 aaPredicted RBP22.72■■□□□ 1.23
SSBP4-204ENST00000597724 KCNQ2O43526 872 aa22.71■■□□□ 1.23
SSBP4-204ENST00000597724 MTHFSP49914 203 aa22.71■■□□□ 1.23
SSBP4-204ENST00000597724 PARD3Q8TEW0 1356 aa22.71■■□□□ 1.23
SSBP4-204ENST00000597724 ACSBG1Q96GR2 724 aa22.7■■□□□ 1.22
SSBP4-204ENST00000597724 IGSF1Q8N6C5 1336 aa22.7■■□□□ 1.22
SSBP4-204ENST00000597724 PLSCR1O15162 318 aa22.69■■□□□ 1.22
SSBP4-204ENST00000597724 NHSQ6T4R5 1651 aa22.68■■□□□ 1.22
SSBP4-204ENST00000597724 PCDH11XQ9BZA7 1347 aa22.66■■□□□ 1.22
SSBP4-204ENST00000597724 PCDH11YQ9BZA8 1340 aa22.66■■□□□ 1.22
SSBP4-204ENST00000597724 KAT6BQ8WYB5 2073 aa22.66■■□□□ 1.22
SSBP4-204ENST00000597724 IL13P35225 146 aa22.66■■□□□ 1.22
SSBP4-204ENST00000597724 CYP27B1O15528 508 aa22.65■■□□□ 1.22
SSBP4-204ENST00000597724 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.65■■□□□ 1.22
SSBP4-204ENST00000597724 PKD1L3Q7Z443 1732 aa22.65■■□□□ 1.22
SSBP4-204ENST00000597724 RREB1Q92766 1687 aa22.65■■□□□ 1.22
SSBP4-204ENST00000597724 RGPD3A6NKT7 1758 aaPredicted RBP22.64■■□□□ 1.22
SSBP4-204ENST00000597724 RGPD4Q7Z3J3 1758 aa22.64■■□□□ 1.22
SSBP4-204ENST00000597724 SPG7Q9UQ90 795 aa22.64■■□□□ 1.21
SSBP4-204ENST00000597724 PLEKHG2Q9H7P9 1386 aa22.63■■□□□ 1.21
SSBP4-204ENST00000597724 PRIM1P49642 420 aaKnown RBP22.61■■□□□ 1.21
SSBP4-204ENST00000597724 AEBP1Q8IUX7 1158 aa22.61■■□□□ 1.21
SSBP4-204ENST00000597724 PROM2Q8N271 834 aa22.61■■□□□ 1.21
SSBP4-204ENST00000597724 BTAF1O14981 1849 aa22.6■■□□□ 1.21
SSBP4-204ENST00000597724 DIAPH1O60610 1272 aaKnown RBP22.6■■□□□ 1.21
SSBP4-204ENST00000597724 DOT1LQ8TEK3 1739 aa22.6■■□□□ 1.21
SSBP4-204ENST00000597724 NKX1-1Q15270 411 aaPredicted RBP22.59■■□□□ 1.21
SSBP4-204ENST00000597724 SULT6B1Q6IMI4 303 aa22.59■■□□□ 1.21
SSBP4-204ENST00000597724 SYTL4Q96C24 671 aaPredicted RBP22.59■■□□□ 1.21
SSBP4-204ENST00000597724 KDRP35968 1356 aa22.59■■□□□ 1.21
SSBP4-204ENST00000597724 NUP188Q5SRE5 1749 aa22.59■■□□□ 1.21
SSBP4-204ENST00000597724 PPP2R1AP30153 589 aa22.58■■□□□ 1.21
SSBP4-204ENST00000597724 DDX10Q13206 875 aaKnown RBP22.58■■□□□ 1.21
SSBP4-204ENST00000597724 TXNRD1Q16881 649 aa22.58■■□□□ 1.21
SSBP4-204ENST00000597724 COL3A1P02461 1466 aaPredicted RBP22.57■■□□□ 1.2
SSBP4-204ENST00000597724 SRCAPQ6ZRS2 3230 aa22.56■■□□□ 1.2
SSBP4-204ENST00000597724 PHKG2P15735 406 aa22.56■■□□□ 1.2
SSBP4-204ENST00000597724 PLEKHO1Q53GL0 409 aaPredicted RBP22.56■■□□□ 1.2
SSBP4-204ENST00000597724 IFNL2Q8IZJ0 200 aa22.56■■□□□ 1.2
SSBP4-204ENST00000597724 PSDA5PKW4 1024 aaPredicted RBP22.55■■□□□ 1.2
SSBP4-204ENST00000597724 R3HDM1Q15032 1099 aaKnown RBP22.55■■□□□ 1.2
SSBP4-204ENST00000597724 AMOTQ4VCS5 1084 aa22.55■■□□□ 1.2
SSBP4-204ENST00000597724 NBPF14Q5TI25 921 aa22.55■■□□□ 1.2
SSBP4-204ENST00000597724 HMOX1P09601 288 aa22.53■■□□□ 1.2
SSBP4-204ENST00000597724 CFAP53Q96M91 514 aa22.53■■□□□ 1.2
SSBP4-204ENST00000597724 TOGARAM1Q9Y4F4 1720 aa22.52■■□□□ 1.2
SSBP4-204ENST00000597724 ZNF530Q6P9A1 599 aaPredicted RBP22.5■■□□□ 1.19
SSBP4-204ENST00000597724 MPRIPQ6WCQ1 1025 aa22.5■■□□□ 1.19
SSBP4-204ENST00000597724 U2SURPO15042 1029 aaKnown RBP22.49■■□□□ 1.19
SSBP4-204ENST00000597724 ANO8Q9HCE9 1232 aaPredicted RBP22.49■■□□□ 1.19
SSBP4-204ENST00000597724 ITGB4P16144 1822 aa22.49■■□□□ 1.19
SSBP4-204ENST00000597724 LRRC4BQ9NT99 713 aa22.48■■□□□ 1.19
SSBP4-204ENST00000597724 HSP90AB1P08238 724 aaKnown RBP22.47■■□□□ 1.19
SSBP4-204ENST00000597724 SLC27A3Q5K4L6 730 aa22.47■■□□□ 1.19
SSBP4-204ENST00000597724 DCAF5Q96JK2 942 aa22.47■■□□□ 1.19
SSBP4-204ENST00000597724 LY75O60449 1722 aa22.46■■□□□ 1.19
SSBP4-204ENST00000597724 C1orf141Q5JVX7 400 aa22.46■■□□□ 1.19
SSBP4-204ENST00000597724 PIGBQ92521 554 aa22.46■■□□□ 1.19
SSBP4-204ENST00000597724 RALBP1Q15311 655 aa22.45■■□□□ 1.18
SSBP4-204ENST00000597724 NUDCQ9Y266 331 aa22.45■■□□□ 1.18
SSBP4-204ENST00000597724 ERVV-2B6SEH9 535 aa22.44■■□□□ 1.18
SSBP4-204ENST00000597724 TMOD3Q9NYL9 352 aa22.44■■□□□ 1.18
SSBP4-204ENST00000597724 SLC15A2Q16348 729 aa22.43■■□□□ 1.18
SSBP4-204ENST00000597724 STK32BQ9NY57 414 aa22.43■■□□□ 1.18
SSBP4-204ENST00000597724 PAPPAQ13219 1627 aa22.42■■□□□ 1.18
SSBP4-204ENST00000597724 KDM6AO15550 1401 aaPredicted RBP22.42■■□□□ 1.18
SSBP4-204ENST00000597724 KCNQ4P56696 695 aa22.42■■□□□ 1.18
SSBP4-204ENST00000597724 AKAP4Q5JQC9 854 aa22.42■■□□□ 1.18
SSBP4-204ENST00000597724 SMARCC1Q92922 1105 aaPredicted RBP22.42■■□□□ 1.18
SSBP4-204ENST00000597724 PALLDQ8WX93 1383 aa22.41■■□□□ 1.18
SSBP4-204ENST00000597724 MTHFSDQ2M296 383 aaKnown RBP22.41■■□□□ 1.18
SSBP4-204ENST00000597724 CCNL1Q9UK58 526 aaPredicted RBP22.41■■□□□ 1.18
SSBP4-204ENST00000597724 RSPH6AQ9H0K4 717 aa22.4■■□□□ 1.18
SSBP4-204ENST00000597724 ZNF316A6NFI3 1004 aaPredicted RBP22.39■■□□□ 1.17
SSBP4-204ENST00000597724 U2AF1L5P0DN76 240 aaPredicted RBP22.39■■□□□ 1.17
SSBP4-204ENST00000597724 U2AF1Q01081 240 aaKnown RBP eCLIP22.39■■□□□ 1.17
SSBP4-204ENST00000597724 ASAP1Q9ULH1 1129 aa22.39■■□□□ 1.17
SSBP4-204ENST00000597724 CABP4P57796 275 aa22.38■■□□□ 1.17
SSBP4-204ENST00000597724 ZNF827Q17R98 1081 aa22.38■■□□□ 1.17
SSBP4-204ENST00000597724 AKT1S1Q96B36 256 aa22.38■■□□□ 1.17
SSBP4-204ENST00000597724 FCHSD2O94868 740 aa22.37■■□□□ 1.17
SSBP4-204ENST00000597724 PRKAR2BP31323 418 aa22.37■■□□□ 1.17
SSBP4-204ENST00000597724 ATG3Q9NT62 314 aa22.37■■□□□ 1.17
SSBP4-204ENST00000597724 SCN11AQ9UI33 1791 aa22.36■■□□□ 1.17
SSBP4-204ENST00000597724 PHACTR3Q96KR7 559 aa22.36■■□□□ 1.17
SSBP4-204ENST00000597724 LGR6Q9HBX8 967 aa22.36■■□□□ 1.17
SSBP4-204ENST00000597724 NFATC2IPQ8NCF5 419 aa22.35■■□□□ 1.17
SSBP4-204ENST00000597724 PDGFDQ9GZP0 370 aaPredicted RBP22.35■■□□□ 1.17
SSBP4-204ENST00000597724 LRP5O75197 1615 aa22.35■■□□□ 1.17
SSBP4-204ENST00000597724 MYBBP1AQ9BQG0 1328 aaKnown RBP22.34■■□□□ 1.17
SSBP4-204ENST00000597724 RNMTO43148 476 aaKnown RBP22.34■■□□□ 1.17
SSBP4-204ENST00000597724 GAS2L2Q8NHY3 880 aa22.34■■□□□ 1.17
SSBP4-204ENST00000597724 CASZ1Q86V15 1759 aa22.34■■□□□ 1.17
SSBP4-204ENST00000597724 HMGB2P26583 209 aaKnown RBP22.33■■□□□ 1.17
SSBP4-204ENST00000597724 PRKRIP1Q9H875 184 aaPredicted RBP22.33■■□□□ 1.17
SSBP4-204ENST00000597724 LOC102724428A0A0B4J2F2 783 aa22.32■■□□□ 1.16
SSBP4-204ENST00000597724 SIK1P57059 783 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms