RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLFN5Q08AF3 891 aa19.88■□□□□ 0.77
TRIM28-209ENST00000597423 C1orf141Q5JVX7 400 aa19.88■□□□□ 0.77
TRIM28-209ENST00000597423 CRB1P82279 1406 aa19.87■□□□□ 0.77
TRIM28-209ENST00000597423 C8orf37Q96NL8 207 aa19.87■□□□□ 0.77
TRIM28-209ENST00000597423 FAM208AQ9UK61 1670 aaKnown RBP19.87■□□□□ 0.77
TRIM28-209ENST00000597423 IL2RBP14784 551 aa19.86■□□□□ 0.77
TRIM28-209ENST00000597423 AKAP4Q5JQC9 854 aa19.86■□□□□ 0.77
TRIM28-209ENST00000597423 ZNF530Q6P9A1 599 aaPredicted RBP19.86■□□□□ 0.77
TRIM28-209ENST00000597423 UNC5CLQ8IV45 518 aa19.86■□□□□ 0.77
TRIM28-209ENST00000597423 CDCA7LQ96GN5 454 aa19.86■□□□□ 0.77
TRIM28-209ENST00000597423 FBXO41Q8TF61 875 aa19.85■□□□□ 0.77
TRIM28-209ENST00000597423 CDCA7Q9BWT1 371 aaPredicted RBP19.85■□□□□ 0.77
TRIM28-209ENST00000597423 THRAP3Q9Y2W1 955 aaKnown RBP19.85■□□□□ 0.77
TRIM28-209ENST00000597423 RGPD5Q99666 1765 aa19.85■□□□□ 0.77
TRIM28-209ENST00000597423 GNAI1P63096 354 aa19.84■□□□□ 0.77
TRIM28-209ENST00000597423 TRMT2AQ8IZ69 625 aaKnown RBP19.84■□□□□ 0.77
TRIM28-209ENST00000597423 FNBP4Q8N3X1 1017 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-209ENST00000597423 HSP90AB1P08238 724 aaKnown RBP19.83■□□□□ 0.77
TRIM28-209ENST00000597423 USP35Q9P2H5 1018 aa19.83■□□□□ 0.77
TRIM28-209ENST00000597423 MAP3K5Q99683 1374 aa19.83■□□□□ 0.76
TRIM28-209ENST00000597423 IFNL2Q8IZJ0 200 aa19.82■□□□□ 0.76
TRIM28-209ENST00000597423 ZCRB1Q8TBF4 217 aaKnown RBP19.82■□□□□ 0.76
TRIM28-209ENST00000597423 IFT57Q9NWB7 429 aa19.82■□□□□ 0.76
TRIM28-209ENST00000597423 CCDC9Q9Y3X0 531 aaKnown RBP19.82■□□□□ 0.76
TRIM28-209ENST00000597423 DUSP27Q5VZP5 1158 aa19.81■□□□□ 0.76
TRIM28-209ENST00000597423 SLIT2O94813 1529 aa19.81■□□□□ 0.76
TRIM28-209ENST00000597423 MCM10Q7L590 875 aa19.8■□□□□ 0.76
TRIM28-209ENST00000597423 CFAP44Q96MT7 982 aa19.8■□□□□ 0.76
TRIM28-209ENST00000597423 USP21Q9UK80 565 aa19.8■□□□□ 0.76
TRIM28-209ENST00000597423 LAS1LQ9Y4W2 734 aaKnown RBP19.8■□□□□ 0.76
TRIM28-209ENST00000597423 VPS72Q15906 364 aa19.79■□□□□ 0.76
TRIM28-209ENST00000597423 BABAM1Q9NWV8 329 aa19.79■□□□□ 0.76
TRIM28-209ENST00000597423 SPATA31A1Q5TZJ5 1347 aa19.78■□□□□ 0.76
TRIM28-209ENST00000597423 SPATA31A5Q5VU36 1347 aa19.78■□□□□ 0.76
TRIM28-209ENST00000597423 SPATA31A7Q8IWB4 1347 aa19.78■□□□□ 0.76
TRIM28-209ENST00000597423 DCTN1Q14203 1278 aa19.78■□□□□ 0.76
TRIM28-209ENST00000597423 PCDH11XQ9BZA7 1347 aa19.77■□□□□ 0.76
TRIM28-209ENST00000597423 PCDH11YQ9BZA8 1340 aa19.77■□□□□ 0.76
TRIM28-209ENST00000597423 OVOS2A0A0G2JMS6 1433 aa19.77■□□□□ 0.76
TRIM28-209ENST00000597423 EXOC5O00471 708 aa19.77■□□□□ 0.76
TRIM28-209ENST00000597423 THUMPD2Q9BTF0 503 aaKnown RBP19.77■□□□□ 0.76
TRIM28-209ENST00000597423 SPINK5Q9NQ38 1064 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-209ENST00000597423 RGPD2P0DJD1 1756 aa19.77■□□□□ 0.76
TRIM28-209ENST00000597423 CT47B1P0C2W7 299 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-209ENST00000597423 ZNF853P0CG23 659 aa19.76■□□□□ 0.75
TRIM28-209ENST00000597423 PHKG2P15735 406 aa19.76■□□□□ 0.75
TRIM28-209ENST00000597423 TEFQ10587 303 aa19.76■□□□□ 0.75
TRIM28-209ENST00000597423 TAF7Q15545 349 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-209ENST00000597423 BARGINQ6ZT62 677 aa19.76■□□□□ 0.75
TRIM28-209ENST00000597423 IL17REQ8NFR9 667 aa19.76■□□□□ 0.75
TRIM28-209ENST00000597423 DCAF5Q96JK2 942 aa19.75■□□□□ 0.75
TRIM28-209ENST00000597423 NWD2Q9ULI1 1742 aa19.75■□□□□ 0.75
TRIM28-209ENST00000597423 MEGF6O75095 1541 aa19.75■□□□□ 0.75
TRIM28-209ENST00000597423 CHL1O00533 1208 aa19.74■□□□□ 0.75
TRIM28-209ENST00000597423 RNMTO43148 476 aaKnown RBP19.74■□□□□ 0.75
TRIM28-209ENST00000597423 MPRIPQ6WCQ1 1025 aa19.74■□□□□ 0.75
TRIM28-209ENST00000597423 RCAN3Q9UKA8 241 aa19.74■□□□□ 0.75
TRIM28-209ENST00000597423 LRP6O75581 1613 aa19.73■□□□□ 0.75
TRIM28-209ENST00000597423 DDX54Q8TDD1 881 aaKnown RBP19.73■□□□□ 0.75
TRIM28-209ENST00000597423 TRPC5Q9UL62 973 aaPredicted RBP19.73■□□□□ 0.75
TRIM28-209ENST00000597423 AFF2P51816 1311 aa19.73■□□□□ 0.75
TRIM28-209ENST00000597423 FANCIQ9NVI1 1328 aa19.73■□□□□ 0.75
TRIM28-209ENST00000597423 BCL9LQ86UU0 1499 aa19.73■□□□□ 0.75
TRIM28-209ENST00000597423 PLCH1Q4KWH8 1693 aa19.72■□□□□ 0.75
TRIM28-209ENST00000597423 LGR6Q9HBX8 967 aa19.72■□□□□ 0.75
TRIM28-209ENST00000597423 TSPYL4Q9UJ04 414 aa19.72■□□□□ 0.75
TRIM28-209ENST00000597423 CEMIPQ8WUJ3 1361 aa19.71■□□□□ 0.75
TRIM28-209ENST00000597423 CYP27B1O15528 508 aa19.71■□□□□ 0.75
TRIM28-209ENST00000597423 TSR2Q969E8 191 aaKnown RBP19.71■□□□□ 0.75
TRIM28-209ENST00000597423 MBIPQ9NS73 344 aa19.71■□□□□ 0.75
TRIM28-209ENST00000597423 NKX1-1Q15270 411 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-209ENST00000597423 DDB1Q16531 1140 aa19.7■□□□□ 0.74
TRIM28-209ENST00000597423 ZNF428Q96B54 188 aa19.7■□□□□ 0.74
TRIM28-209ENST00000597423 EXOSC9Q06265 439 aaKnown RBP19.69■□□□□ 0.74
TRIM28-209ENST00000597423 CHMP4AQ9BY43 222 aa19.69■□□□□ 0.74
TRIM28-209ENST00000597423 PARP4Q9UKK3 1724 aaKnown RBP19.68■□□□□ 0.74
TRIM28-209ENST00000597423 ERVV-2B6SEH9 535 aa19.68■□□□□ 0.74
TRIM28-209ENST00000597423 GJD4Q96KN9 370 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-209ENST00000597423 SUPT16HQ9Y5B9 1047 aaKnown RBP19.68■□□□□ 0.74
TRIM28-209ENST00000597423 DISP2A7MBM2 1401 aa19.68■□□□□ 0.74
TRIM28-209ENST00000597423 BTBD11A6QL63 1104 aa19.67■□□□□ 0.74
TRIM28-209ENST00000597423 NEFLP07196 543 aa19.67■□□□□ 0.74
TRIM28-209ENST00000597423 CABP4P57796 275 aa19.67■□□□□ 0.74
TRIM28-209ENST00000597423 ZNF772Q68DY9 489 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-209ENST00000597423 QTRT2Q9H974 415 aaKnown RBP19.67■□□□□ 0.74
TRIM28-209ENST00000597423 NRAPQ86VF7 1730 aa19.67■□□□□ 0.74
TRIM28-209ENST00000597423 DLG5Q8TDM6 1919 aa19.66■□□□□ 0.74
TRIM28-209ENST00000597423 FAM98CQ17RN3 349 aaKnown RBP19.66■□□□□ 0.74
TRIM28-209ENST00000597423 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.66■□□□□ 0.74
TRIM28-209ENST00000597423 SLC52A2Q9HAB3 445 aa19.66■□□□□ 0.74
TRIM28-209ENST00000597423 SOS1Q07889 1333 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-209ENST00000597423 A0A0G2JS52 829 aa19.64■□□□□ 0.73
TRIM28-209ENST00000597423 MYT1Q01538 1121 aa19.64■□□□□ 0.73
TRIM28-209ENST00000597423 MIS18AQ9NYP9 233 aa19.64■□□□□ 0.73
TRIM28-209ENST00000597423 PKD1L3Q7Z443 1732 aa19.63■□□□□ 0.73
TRIM28-209ENST00000597423 TWISTNBQ3B726 338 aaPredicted RBP19.63■□□□□ 0.73
TRIM28-209ENST00000597423 NFATC2IPQ8NCF5 419 aa19.63■□□□□ 0.73
TRIM28-209ENST00000597423 ATRNO75882 1429 aa19.61■□□□□ 0.73
TRIM28-209ENST00000597423 ONECUT3O60422 494 aaPredicted RBP19.61■□□□□ 0.73
TRIM28-209ENST00000597423 VAMP4O75379 141 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms