RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FSTL1Q12841 308 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 FAM161AQ3B820 660 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 NMRK2Q9NPI5 230 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 CD163L1Q9NR16 1453 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 PPIP5K1Q6PFW1 1433 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 C16orf71Q8IYS4 520 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-208ENST00000597172 USP19O94966 1318 aa12.93□□□□□ -0.34
TRIM28-208ENST00000597172 QSER1Q2KHR3 1735 aa12.93□□□□□ -0.34
TRIM28-208ENST00000597172 BRD4O60885 1362 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-208ENST00000597172 ANKRD36BQ8N2N9 1353 aa12.93□□□□□ -0.34
TRIM28-208ENST00000597172 ACEP12821 1306 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 MSH5O43196 834 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 USP6P35125 1406 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 CPSF1Q10570 1443 aaKnown RBP12.92□□□□□ -0.34
TRIM28-208ENST00000597172 SLC27A3Q5K4L6 730 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 NLRP13Q86W25 1043 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 TERF2IPQ9NYB0 399 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 A0A1W2PP64 1363 aa12.92□□□□□ -0.34
TRIM28-208ENST00000597172 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
TRIM28-208ENST00000597172 HDGFL2Q7Z4V5 671 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-208ENST00000597172 WDR17Q8IZU2 1322 aa12.9□□□□□ -0.34
TRIM28-208ENST00000597172 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
TRIM28-208ENST00000597172 AMER1Q5JTC6 1135 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-208ENST00000597172 MSL1Q68DK7 614 aa12.9□□□□□ -0.34
TRIM28-208ENST00000597172 ZNF692Q9BU19 519 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-208ENST00000597172 POLR3AO14802 1390 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-208ENST00000597172 NHSQ6T4R5 1651 aa12.89□□□□□ -0.35
TRIM28-208ENST00000597172 CARD10Q9BWT7 1032 aa12.89□□□□□ -0.35
TRIM28-208ENST00000597172 KNSTRNQ9Y448 316 aa12.89□□□□□ -0.35
TRIM28-208ENST00000597172 IGSF1Q8N6C5 1336 aa12.88□□□□□ -0.35
TRIM28-208ENST00000597172 COL23A1Q86Y22 540 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-208ENST00000597172 KTN1Q86UP2 1357 aaKnown RBP12.88□□□□□ -0.35
TRIM28-208ENST00000597172 BTAF1O14981 1849 aa12.88□□□□□ -0.35
TRIM28-208ENST00000597172 NSD3Q9BZ95 1437 aa12.88□□□□□ -0.35
TRIM28-208ENST00000597172 KCNQ4P56696 695 aa12.87□□□□□ -0.35
TRIM28-208ENST00000597172 AXIN2Q9Y2T1 843 aa12.87□□□□□ -0.35
TRIM28-208ENST00000597172 WNK3Q9BYP7 1800 aa12.87□□□□□ -0.35
TRIM28-208ENST00000597172 TUBGCP6Q96RT7 1819 aa12.86□□□□□ -0.35
TRIM28-208ENST00000597172 FYB1O15117 783 aa12.86□□□□□ -0.35
TRIM28-208ENST00000597172 CSB-PGBD3P0DP91 1061 aa12.86□□□□□ -0.35
TRIM28-208ENST00000597172 MIER1Q8N108 512 aa12.86□□□□□ -0.35
TRIM28-208ENST00000597172 CNGB1Q14028 1251 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-208ENST00000597172 CC2D1BQ5T0F9 858 aaKnown RBP12.85□□□□□ -0.35
TRIM28-208ENST00000597172 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.85□□□□□ -0.35
TRIM28-208ENST00000597172 PRKRIP1Q9H875 184 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-208ENST00000597172 TTC21BQ7Z4L5 1316 aa12.85□□□□□ -0.35
TRIM28-208ENST00000597172 ITSN1Q15811 1721 aa12.85□□□□□ -0.35
TRIM28-208ENST00000597172 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
TRIM28-208ENST00000597172 ANP32CO43423 234 aa12.84□□□□□ -0.35
TRIM28-208ENST00000597172 MLLT1Q03111 559 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-208ENST00000597172 EDC4Q6P2E9 1401 aaKnown RBP12.84□□□□□ -0.35
TRIM28-208ENST00000597172 PRDM10Q9NQV6 1147 aa12.83□□□□□ -0.36
TRIM28-208ENST00000597172 CGNL1Q0VF96 1302 aa12.83□□□□□ -0.36
TRIM28-208ENST00000597172 NME9Q86XW9 330 aa12.82□□□□□ -0.36
TRIM28-208ENST00000597172 SMC1BQ8NDV3 1235 aa12.82□□□□□ -0.36
TRIM28-208ENST00000597172 GGNBP2Q9H3C7 697 aa12.82□□□□□ -0.36
TRIM28-208ENST00000597172 NLRP6P59044 892 aa12.81□□□□□ -0.36
TRIM28-208ENST00000597172 MON2Q7Z3U7 1717 aa12.81□□□□□ -0.36
TRIM28-208ENST00000597172 COL18A1P39060 1754 aa12.8□□□□□ -0.36
TRIM28-208ENST00000597172 RALBP1Q15311 655 aa12.8□□□□□ -0.36
TRIM28-208ENST00000597172 TTC21AQ8NDW8 1320 aa12.8□□□□□ -0.36
TRIM28-208ENST00000597172 ARHGAP27Q6ZUM4 889 aa12.79□□□□□ -0.36
TRIM28-208ENST00000597172 MORC1Q86VD1 984 aa12.79□□□□□ -0.36
TRIM28-208ENST00000597172 ABHD8Q96I13 439 aa12.79□□□□□ -0.36
TRIM28-208ENST00000597172 RRAGCQ9HB90 399 aa12.79□□□□□ -0.36
TRIM28-208ENST00000597172 CICQ96RK0 1608 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-208ENST00000597172 FOXN1O15353 648 aa12.78□□□□□ -0.36
TRIM28-208ENST00000597172 CCNL1Q9UK58 526 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-208ENST00000597172 KDM2BQ8NHM5 1336 aa12.78□□□□□ -0.36
TRIM28-208ENST00000597172 NSD2O96028 1365 aa12.78□□□□□ -0.36
TRIM28-208ENST00000597172 ABCC6O95255 1503 aa12.78□□□□□ -0.36
TRIM28-208ENST00000597172 RGS19P49795 217 aa12.77□□□□□ -0.37
TRIM28-208ENST00000597172 FLAD1Q8NFF5 587 aa12.77□□□□□ -0.37
TRIM28-208ENST00000597172 USP31Q70CQ4 1352 aa12.77□□□□□ -0.37
TRIM28-208ENST00000597172 FBLN1P23142 703 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 PPP2R1AP30153 589 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 C9orf131Q5VYM1 1079 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 ARHGEF25Q86VW2 580 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 COG3Q96JB2 828 aa12.76□□□□□ -0.37
TRIM28-208ENST00000597172 TNNT2P45379 298 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-208ENST00000597172 CTCFP49711 727 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-208ENST00000597172 C10orf71Q711Q0 1435 aa12.75□□□□□ -0.37
TRIM28-208ENST00000597172 SYTL4Q96C24 671 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-208ENST00000597172 BCS1LQ9Y276 419 aa12.75□□□□□ -0.37
TRIM28-208ENST00000597172 RGPD5Q99666 1765 aa12.74□□□□□ -0.37
TRIM28-208ENST00000597172 PLEKHG2Q9H7P9 1386 aa12.74□□□□□ -0.37
TRIM28-208ENST00000597172 MYBBP1AQ9BQG0 1328 aaKnown RBP12.74□□□□□ -0.37
TRIM28-208ENST00000597172 IL2RBP14784 551 aa12.74□□□□□ -0.37
TRIM28-208ENST00000597172 PIK3C2AO00443 1686 aa12.73□□□□□ -0.37
TRIM28-208ENST00000597172 SLIT3O75094 1523 aa12.73□□□□□ -0.37
TRIM28-208ENST00000597172 KCPQ6ZWJ8 1503 aa12.73□□□□□ -0.37
TRIM28-208ENST00000597172 CCER2I3L3R5 266 aa12.73□□□□□ -0.37
TRIM28-208ENST00000597172 PRIM1P49642 420 aaKnown RBP12.73□□□□□ -0.37
TRIM28-208ENST00000597172 KIF20BQ96Q89 1820 aa12.72□□□□□ -0.37
TRIM28-208ENST00000597172 CCDC85CA6NKD9 419 aa12.72□□□□□ -0.37
TRIM28-208ENST00000597172 DDX54Q8TDD1 881 aaKnown RBP12.72□□□□□ -0.37
TRIM28-208ENST00000597172 AIDAQ96BJ3 306 aa12.72□□□□□ -0.37
TRIM28-208ENST00000597172 NLRP2Q9NX02 1062 aa12.72□□□□□ -0.37
TRIM28-208ENST00000597172 POLKQ9UBT6 870 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms