RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 NPC1L1Q9UHC9 1359 aa15.03■□□□□ -0
SHKBP1-206ENST00000595523 APBA3O96018 575 aa15.03■□□□□ -0
SHKBP1-206ENST00000595523 CAMKK2Q96RR4 588 aa15.03■□□□□ -0
SHKBP1-206ENST00000595523 TOGARAM1Q9Y4F4 1720 aa15.03■□□□□ -0
SHKBP1-206ENST00000595523 EIF4A2Q14240 407 aaKnown RBP15.02■□□□□ -0
SHKBP1-206ENST00000595523 EZH2Q15910 746 aaKnown RBP15.02■□□□□ -0
SHKBP1-206ENST00000595523 EYA1Q99502 592 aa15.02■□□□□ -0
SHKBP1-206ENST00000595523 ITGB4P16144 1822 aa15.01□□□□□ -0.01
SHKBP1-206ENST00000595523 CC2D1BQ5T0F9 858 aaKnown RBP15.01□□□□□ -0.01
SHKBP1-206ENST00000595523 BCL11BQ9C0K0 894 aaPredicted RBP15.01□□□□□ -0.01
SHKBP1-206ENST00000595523 PARD3Q8TEW0 1356 aa15□□□□□ -0.01
SHKBP1-206ENST00000595523 KCNQ2O43526 872 aa15□□□□□ -0.01
SHKBP1-206ENST00000595523 ZCRB1Q8TBF4 217 aaKnown RBP14.99□□□□□ -0.01
SHKBP1-206ENST00000595523 DDX54Q8TDD1 881 aaKnown RBP14.99□□□□□ -0.01
SHKBP1-206ENST00000595523 RAPGEF4Q8WZA2 1011 aa14.99□□□□□ -0.01
SHKBP1-206ENST00000595523 IGSF1Q8N6C5 1336 aa14.98□□□□□ -0.01
SHKBP1-206ENST00000595523 TATP17735 454 aaPredicted RBP14.98□□□□□ -0.01
SHKBP1-206ENST00000595523 ACSBG1Q96GR2 724 aa14.98□□□□□ -0.01
SHKBP1-206ENST00000595523 LY75O60449 1722 aa14.97□□□□□ -0.01
SHKBP1-206ENST00000595523 VIRMAQ69YN4 1812 aaKnown RBP14.97□□□□□ -0.01
SHKBP1-206ENST00000595523 COL3A1P02461 1466 aaPredicted RBP14.97□□□□□ -0.01
SHKBP1-206ENST00000595523 PLSCR1O15162 318 aa14.96□□□□□ -0.01
SHKBP1-206ENST00000595523 PAPPAQ13219 1627 aa14.95□□□□□ -0.02
SHKBP1-206ENST00000595523 CYP27B1O15528 508 aa14.95□□□□□ -0.02
SHKBP1-206ENST00000595523 MTHFSP49914 203 aa14.95□□□□□ -0.02
SHKBP1-206ENST00000595523 CNGB1Q14028 1251 aaPredicted RBP14.95□□□□□ -0.02
SHKBP1-206ENST00000595523 PCDH11XQ9BZA7 1347 aa14.94□□□□□ -0.02
SHKBP1-206ENST00000595523 PCDH11YQ9BZA8 1340 aa14.94□□□□□ -0.02
SHKBP1-206ENST00000595523 IL13P35225 146 aa14.94□□□□□ -0.02
SHKBP1-206ENST00000595523 PROM2Q8N271 834 aa14.94□□□□□ -0.02
SHKBP1-206ENST00000595523 AEBP1Q8IUX7 1158 aa14.93□□□□□ -0.02
SHKBP1-206ENST00000595523 KDRP35968 1356 aa14.93□□□□□ -0.02
SHKBP1-206ENST00000595523 PLEKHG2Q9H7P9 1386 aa14.93□□□□□ -0.02
SHKBP1-206ENST00000595523 PSDA5PKW4 1024 aaPredicted RBP14.92□□□□□ -0.02
SHKBP1-206ENST00000595523 TUBGCP6Q96RT7 1819 aa14.92□□□□□ -0.02
SHKBP1-206ENST00000595523 PRIM1P49642 420 aaKnown RBP14.91□□□□□ -0.02
SHKBP1-206ENST00000595523 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.91□□□□□ -0.02
SHKBP1-206ENST00000595523 TAF1LQ8IZX4 1826 aa14.91□□□□□ -0.02
SHKBP1-206ENST00000595523 LRP5O75197 1615 aa14.91□□□□□ -0.02
SHKBP1-206ENST00000595523 CASZ1Q86V15 1759 aa14.9□□□□□ -0.02
SHKBP1-206ENST00000595523 R3HDM1Q15032 1099 aaKnown RBP14.9□□□□□ -0.02
SHKBP1-206ENST00000595523 TXNRD1Q16881 649 aa14.9□□□□□ -0.02
SHKBP1-206ENST00000595523 SCN11AQ9UI33 1791 aa14.9□□□□□ -0.02
SHKBP1-206ENST00000595523 NKX1-1Q15270 411 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-206ENST00000595523 ANO8Q9HCE9 1232 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-206ENST00000595523 SPG7Q9UQ90 795 aa14.89□□□□□ -0.03
SHKBP1-206ENST00000595523 SULT6B1Q6IMI4 303 aa14.88□□□□□ -0.03
SHKBP1-206ENST00000595523 SYTL4Q96C24 671 aaPredicted RBP14.88□□□□□ -0.03
SHKBP1-206ENST00000595523 QSER1Q2KHR3 1735 aa14.88□□□□□ -0.03
SHKBP1-206ENST00000595523 C5P01031 1676 aa14.87□□□□□ -0.03
SHKBP1-206ENST00000595523 PHKG2P15735 406 aa14.87□□□□□ -0.03
SHKBP1-206ENST00000595523 PPP2R1AP30153 589 aa14.87□□□□□ -0.03
SHKBP1-206ENST00000595523 DIAPH1O60610 1272 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-206ENST00000595523 ZEB1P37275 1124 aaPredicted RBP14.86□□□□□ -0.03
SHKBP1-206ENST00000595523 LRRC4BQ9NT99 713 aa14.86□□□□□ -0.03
SHKBP1-206ENST00000595523 ADAMTS7Q9UKP4 1686 aa14.86□□□□□ -0.03
SHKBP1-206ENST00000595523 KDM6AO15550 1401 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-206ENST00000595523 IFNL2Q8IZJ0 200 aa14.85□□□□□ -0.03
SHKBP1-206ENST00000595523 HMOX1P09601 288 aa14.84□□□□□ -0.03
SHKBP1-206ENST00000595523 DDX10Q13206 875 aaKnown RBP14.84□□□□□ -0.03
SHKBP1-206ENST00000595523 NBPF14Q5TI25 921 aa14.84□□□□□ -0.03
SHKBP1-206ENST00000595523 PLEKHO1Q53GL0 409 aaPredicted RBP14.83□□□□□ -0.04
SHKBP1-206ENST00000595523 ZNF530Q6P9A1 599 aaPredicted RBP14.83□□□□□ -0.04
SHKBP1-206ENST00000595523 MPRIPQ6WCQ1 1025 aa14.83□□□□□ -0.04
SHKBP1-206ENST00000595523 KCNQ4P56696 695 aa14.82□□□□□ -0.04
SHKBP1-206ENST00000595523 AMOTQ4VCS5 1084 aa14.82□□□□□ -0.04
SHKBP1-206ENST00000595523 PIGBQ92521 554 aa14.82□□□□□ -0.04
SHKBP1-206ENST00000595523 ZNF827Q17R98 1081 aa14.81□□□□□ -0.04
SHKBP1-206ENST00000595523 SLC27A3Q5K4L6 730 aa14.81□□□□□ -0.04
SHKBP1-206ENST00000595523 PDGFDQ9GZP0 370 aaPredicted RBP14.81□□□□□ -0.04
SHKBP1-206ENST00000595523 PALLDQ8WX93 1383 aa14.81□□□□□ -0.04
SHKBP1-206ENST00000595523 ZNF831Q5JPB2 1677 aa14.81□□□□□ -0.04
SHKBP1-206ENST00000595523 SLC15A2Q16348 729 aa14.8□□□□□ -0.04
SHKBP1-206ENST00000595523 C4BP0C0L5 1744 aa14.8□□□□□ -0.04
SHKBP1-206ENST00000595523 SIPA1L3O60292 1781 aaPredicted RBP14.8□□□□□ -0.04
SHKBP1-206ENST00000595523 UBR3Q6ZT12 1888 aa14.8□□□□□ -0.04
SHKBP1-206ENST00000595523 U2SURPO15042 1029 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 MRC1P22897 1456 aa14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 COL5A3P25940 1745 aaPredicted RBP14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 COL24A1Q17RW2 1714 aa14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 DLG5Q8TDM6 1919 aa14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 DCAF5Q96JK2 942 aa14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 CFAP53Q96M91 514 aa14.79□□□□□ -0.04
SHKBP1-206ENST00000595523 AKT1S1Q96B36 256 aa14.78□□□□□ -0.04
SHKBP1-206ENST00000595523 STK32BQ9NY57 414 aa14.78□□□□□ -0.04
SHKBP1-206ENST00000595523 TMOD3Q9NYL9 352 aa14.78□□□□□ -0.04
SHKBP1-206ENST00000595523 CCNL1Q9UK58 526 aaPredicted RBP14.78□□□□□ -0.04
SHKBP1-206ENST00000595523 ERVV-2B6SEH9 535 aa14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 HSP90AB1P08238 724 aaKnown RBP14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 MTHFSDQ2M296 383 aaKnown RBP14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 C1orf141Q5JVX7 400 aa14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 ASAP1Q9ULH1 1129 aa14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 CICQ96RK0 1608 aaPredicted RBP14.77□□□□□ -0.05
SHKBP1-206ENST00000595523 UBR2Q8IWV8 1755 aa14.76□□□□□ -0.05
SHKBP1-206ENST00000595523 TJP1Q07157 1748 aa14.76□□□□□ -0.05
SHKBP1-206ENST00000595523 AKAP4Q5JQC9 854 aa14.76□□□□□ -0.05
SHKBP1-206ENST00000595523 RSPH6AQ9H0K4 717 aa14.76□□□□□ -0.05
SHKBP1-206ENST00000595523 MYH14Q7Z406 1995 aaKnown RBP14.76□□□□□ -0.05
SHKBP1-206ENST00000595523 SMARCC1Q92922 1105 aaPredicted RBP14.75□□□□□ -0.05
SHKBP1-206ENST00000595523 ATG3Q9NT62 314 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms