RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 USP54Q70EL1 1684 aa18.19■□□□□ 0.5
SCAF1-202ENST00000595242 KIF3CO14782 793 aa18.19■□□□□ 0.5
SCAF1-202ENST00000595242 PRIM1P49642 420 aaKnown RBP18.19■□□□□ 0.5
SCAF1-202ENST00000595242 ANKRD24Q8TF21 1146 aa18.19■□□□□ 0.5
SCAF1-202ENST00000595242 CCNL1Q9UK58 526 aaPredicted RBP18.19■□□□□ 0.5
SCAF1-202ENST00000595242 TAF1LQ8IZX4 1826 aa18.19■□□□□ 0.5
SCAF1-202ENST00000595242 DNAJC5GQ8N7S2 189 aa18.18■□□□□ 0.5
SCAF1-202ENST00000595242 C5P01031 1676 aa18.18■□□□□ 0.5
SCAF1-202ENST00000595242 KTN1Q86UP2 1357 aaKnown RBP18.17■□□□□ 0.5
SCAF1-202ENST00000595242 ANKRD36BQ8N2N9 1353 aa18.17■□□□□ 0.5
SCAF1-202ENST00000595242 FAM208AQ9UK61 1670 aaKnown RBP18.17■□□□□ 0.5
SCAF1-202ENST00000595242 NSD2O96028 1365 aa18.16■□□□□ 0.5
SCAF1-202ENST00000595242 RGPD2P0DJD1 1756 aa18.15■□□□□ 0.5
SCAF1-202ENST00000595242 USP31Q70CQ4 1352 aa18.15■□□□□ 0.5
SCAF1-202ENST00000595242 WDR90Q96KV7 1748 aa18.15■□□□□ 0.5
SCAF1-202ENST00000595242 PCNTO95613 3336 aa18.15■□□□□ 0.5
SCAF1-202ENST00000595242 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.14■□□□□ 0.49
SCAF1-202ENST00000595242 WWC3Q9ULE0 1092 aa18.14■□□□□ 0.49
SCAF1-202ENST00000595242 CAPN15O75808 1086 aa18.12■□□□□ 0.49
SCAF1-202ENST00000595242 COL13A1Q5TAT6 717 aaPredicted RBP18.12■□□□□ 0.49
SCAF1-202ENST00000595242 IGSF1Q8N6C5 1336 aa18.12■□□□□ 0.49
SCAF1-202ENST00000595242 TOMM70O94826 608 aa18.11■□□□□ 0.49
SCAF1-202ENST00000595242 NME9Q86XW9 330 aa18.11■□□□□ 0.49
SCAF1-202ENST00000595242 USP47Q96K76 1375 aa18.11■□□□□ 0.49
SCAF1-202ENST00000595242 TIMELESSQ9UNS1 1208 aa18.1■□□□□ 0.49
SCAF1-202ENST00000595242 FLAD1Q8NFF5 587 aa18.09■□□□□ 0.49
SCAF1-202ENST00000595242 UBR3Q6ZT12 1888 aa18.08■□□□□ 0.49
SCAF1-202ENST00000595242 LTV1Q96GA3 475 aaPredicted RBP18.08■□□□□ 0.48
SCAF1-202ENST00000595242 ZNF316A6NFI3 1004 aaPredicted RBP18.07■□□□□ 0.48
SCAF1-202ENST00000595242 CICQ96RK0 1608 aaPredicted RBP18.06■□□□□ 0.48
SCAF1-202ENST00000595242 ZCRB1Q8TBF4 217 aaKnown RBP18.06■□□□□ 0.48
SCAF1-202ENST00000595242 IP6K1Q92551 441 aa18.06■□□□□ 0.48
SCAF1-202ENST00000595242 C4BP0C0L5 1744 aa18.06■□□□□ 0.48
SCAF1-202ENST00000595242 TOGARAM1Q9Y4F4 1720 aa18.06■□□□□ 0.48
SCAF1-202ENST00000595242 SBNO2Q9Y2G9 1366 aa18.05■□□□□ 0.48
SCAF1-202ENST00000595242 ITGB4P16144 1822 aa18.05■□□□□ 0.48
SCAF1-202ENST00000595242 N4BP2Q86UW6 1770 aaPredicted RBP18.04■□□□□ 0.48
SCAF1-202ENST00000595242 CD163L1Q9NR16 1453 aa18.03■□□□□ 0.48
SCAF1-202ENST00000595242 HMGB2P26583 209 aaKnown RBP18.03■□□□□ 0.48
SCAF1-202ENST00000595242 TNS4Q8IZW8 715 aa18.03■□□□□ 0.48
SCAF1-202ENST00000595242 KLRG1Q96E93 195 aa18.03■□□□□ 0.48
SCAF1-202ENST00000595242 MEGF6O75095 1541 aa18.03■□□□□ 0.48
SCAF1-202ENST00000595242 KIF13BQ9NQT8 1826 aa18.02■□□□□ 0.48
SCAF1-202ENST00000595242 PRELPP51888 382 aa18.02■□□□□ 0.48
SCAF1-202ENST00000595242 JMYQ8N9B5 988 aa18.02■□□□□ 0.48
SCAF1-202ENST00000595242 HTRA3P83110 453 aa18.01■□□□□ 0.47
SCAF1-202ENST00000595242 NMRK2Q9NPI5 230 aa18.01■□□□□ 0.47
SCAF1-202ENST00000595242 AMIGO3Q86WK7 504 aa18■□□□□ 0.47
SCAF1-202ENST00000595242 KIAA1551Q9HCM1 1747 aa18■□□□□ 0.47
SCAF1-202ENST00000595242 AK7Q96M32 723 aa17.99■□□□□ 0.47
SCAF1-202ENST00000595242 PALLDQ8WX93 1383 aa17.99■□□□□ 0.47
SCAF1-202ENST00000595242 PHF14O94880 888 aa17.98■□□□□ 0.47
SCAF1-202ENST00000595242 SMIM5Q71RC9 77 aa17.98■□□□□ 0.47
SCAF1-202ENST00000595242 RBM46Q8TBY0 533 aaKnown RBP17.98■□□□□ 0.47
SCAF1-202ENST00000595242 TMC1Q8TDI8 760 aa17.98■□□□□ 0.47
SCAF1-202ENST00000595242 EDC4Q6P2E9 1401 aaKnown RBP17.98■□□□□ 0.47
SCAF1-202ENST00000595242 BRCA1P38398 1863 aaKnown RBP17.97■□□□□ 0.47
SCAF1-202ENST00000595242 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.97■□□□□ 0.47
SCAF1-202ENST00000595242 HDGFL2Q7Z4V5 671 aaPredicted RBP17.97■□□□□ 0.47
SCAF1-202ENST00000595242 HOXC9P31274 260 aa17.96■□□□□ 0.47
SCAF1-202ENST00000595242 MPRIPQ6WCQ1 1025 aa17.96■□□□□ 0.47
SCAF1-202ENST00000595242 C16orf71Q8IYS4 520 aaPredicted RBP17.96■□□□□ 0.47
SCAF1-202ENST00000595242 ROCK2O75116 1388 aaKnown RBP17.95■□□□□ 0.46
SCAF1-202ENST00000595242 SLC12A5Q9H2X9 1139 aa17.95■□□□□ 0.46
SCAF1-202ENST00000595242 MAP2P11137 1827 aaKnown RBP17.95■□□□□ 0.46
SCAF1-202ENST00000595242 CGNL1Q0VF96 1302 aa17.95■□□□□ 0.46
SCAF1-202ENST00000595242 ARFGEF1Q9Y6D6 1849 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 AMPHP49418 695 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 ARHGAP27Q6ZUM4 889 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 L3MBTL2Q969R5 705 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 SIN3AQ96ST3 1273 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 BCS1LQ9Y276 419 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 NSD3Q9BZ95 1437 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 PKD1L3Q7Z443 1732 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 MAP3K19Q56UN5 1328 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 PXDNLA1KZ92 1463 aa17.94■□□□□ 0.46
SCAF1-202ENST00000595242 SSFA2P28290 1259 aa17.93■□□□□ 0.46
SCAF1-202ENST00000595242 FSTL1Q12841 308 aa17.93■□□□□ 0.46
SCAF1-202ENST00000595242 FBLN1P23142 703 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 NBPF6Q5VWK0 638 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 RAPGEF4Q8WZA2 1011 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 SMARCC1Q92922 1105 aaPredicted RBP17.92■□□□□ 0.46
SCAF1-202ENST00000595242 NBPF4Q96M43 638 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 TERF2IPQ9NYB0 399 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 SBF1O95248 1867 aa17.92■□□□□ 0.46
SCAF1-202ENST00000595242 A0A1W2PP64 1363 aa17.91■□□□□ 0.46
SCAF1-202ENST00000595242 A0A0G2JLW4 131 aa17.91■□□□□ 0.46
SCAF1-202ENST00000595242 USHBP1Q8N6Y0 703 aa17.91■□□□□ 0.46
SCAF1-202ENST00000595242 MMP10P09238 476 aa17.9■□□□□ 0.46
SCAF1-202ENST00000595242 TGFB2P61812 414 aa17.9■□□□□ 0.46
SCAF1-202ENST00000595242 DIEXFQ68CQ4 756 aaKnown RBP17.9■□□□□ 0.46
SCAF1-202ENST00000595242 PCDH11XQ9BZA7 1347 aa17.9■□□□□ 0.46
SCAF1-202ENST00000595242 PCDH11YQ9BZA8 1340 aa17.9■□□□□ 0.46
SCAF1-202ENST00000595242 TATP17735 454 aaPredicted RBP17.89■□□□□ 0.45
SCAF1-202ENST00000595242 COG3Q96JB2 828 aa17.89■□□□□ 0.45
SCAF1-202ENST00000595242 TNRC6CQ9HCJ0 1690 aaKnown RBP17.89■□□□□ 0.45
SCAF1-202ENST00000595242 TONSLQ96HA7 1378 aa17.89■□□□□ 0.45
SCAF1-202ENST00000595242 C9orf131Q5VYM1 1079 aa17.87■□□□□ 0.45
SCAF1-202ENST00000595242 LINC00116Q8NCU8 138 aa17.87■□□□□ 0.45
SCAF1-202ENST00000595242 PLEKHG2Q9H7P9 1386 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms