RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TATP17735 454 aaPredicted RBP19.75■□□□□ 0.75
VRK3-206ENST00000594090 DDX54Q8TDD1 881 aaKnown RBP19.73■□□□□ 0.75
VRK3-206ENST00000594090 COL3A1P02461 1466 aaPredicted RBP19.71■□□□□ 0.75
VRK3-206ENST00000594090 APBA3O96018 575 aa19.71■□□□□ 0.75
VRK3-206ENST00000594090 IL13P35225 146 aa19.71■□□□□ 0.75
VRK3-206ENST00000594090 EN1Q05925 392 aaPredicted RBP19.71■□□□□ 0.75
VRK3-206ENST00000594090 DOT1LQ8TEK3 1739 aa19.71■□□□□ 0.75
VRK3-206ENST00000594090 RGPD3A6NKT7 1758 aaPredicted RBP19.71■□□□□ 0.75
VRK3-206ENST00000594090 RGPD4Q7Z3J3 1758 aa19.71■□□□□ 0.75
VRK3-206ENST00000594090 DDX10Q13206 875 aaKnown RBP19.7■□□□□ 0.74
VRK3-206ENST00000594090 BCL11BQ9C0K0 894 aaPredicted RBP19.7■□□□□ 0.74
VRK3-206ENST00000594090 RREB1Q92766 1687 aa19.7■□□□□ 0.74
VRK3-206ENST00000594090 PLEKHG2Q9H7P9 1386 aa19.7■□□□□ 0.74
VRK3-206ENST00000594090 PTF1AQ7RTS3 328 aa19.69■□□□□ 0.74
VRK3-206ENST00000594090 PCDH11XQ9BZA7 1347 aa19.69■□□□□ 0.74
VRK3-206ENST00000594090 PCDH11YQ9BZA8 1340 aa19.69■□□□□ 0.74
VRK3-206ENST00000594090 PARD3Q8TEW0 1356 aa19.68■□□□□ 0.74
VRK3-206ENST00000594090 ACSBG1Q96GR2 724 aa19.68■□□□□ 0.74
VRK3-206ENST00000594090 KDRP35968 1356 aa19.67■□□□□ 0.74
VRK3-206ENST00000594090 KCNQ2O43526 872 aa19.67■□□□□ 0.74
VRK3-206ENST00000594090 EZH2Q15910 746 aaKnown RBP19.67■□□□□ 0.74
VRK3-206ENST00000594090 CAMKK2Q96RR4 588 aa19.67■□□□□ 0.74
VRK3-206ENST00000594090 BTAF1O14981 1849 aa19.67■□□□□ 0.74
VRK3-206ENST00000594090 DIAPH1O60610 1272 aaKnown RBP19.66■□□□□ 0.74
VRK3-206ENST00000594090 PPP2R1AP30153 589 aa19.66■□□□□ 0.74
VRK3-206ENST00000594090 AEBP1Q8IUX7 1158 aa19.66■□□□□ 0.74
VRK3-206ENST00000594090 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.65■□□□□ 0.741e-7■■□□□ 12.1
VRK3-206ENST00000594090 SPG7Q9UQ90 795 aa19.65■□□□□ 0.74
VRK3-206ENST00000594090 NUP188Q5SRE5 1749 aa19.65■□□□□ 0.74
VRK3-206ENST00000594090 TOGARAM1Q9Y4F4 1720 aa19.64■□□□□ 0.73
VRK3-206ENST00000594090 CYP27B1O15528 508 aa19.64■□□□□ 0.73
VRK3-206ENST00000594090 SULT6B1Q6IMI4 303 aa19.64■□□□□ 0.73
VRK3-206ENST00000594090 PLSCR1O15162 318 aa19.62■□□□□ 0.73
VRK3-206ENST00000594090 CFAP53Q96M91 514 aa19.61■□□□□ 0.73
VRK3-206ENST00000594090 KAT6BQ8WYB5 2073 aa19.6■□□□□ 0.73
VRK3-206ENST00000594090 HMOX1P09601 288 aa19.59■□□□□ 0.73
VRK3-206ENST00000594090 PHKG2P15735 406 aa19.59■□□□□ 0.73
VRK3-206ENST00000594090 PRIM1P49642 420 aaKnown RBP19.59■□□□□ 0.73
VRK3-206ENST00000594090 SYTL4Q96C24 671 aaPredicted RBP19.59■□□□□ 0.73
VRK3-206ENST00000594090 NKX1-1Q15270 411 aaPredicted RBP19.59■□□□□ 0.73
VRK3-206ENST00000594090 PLEKHO1Q53GL0 409 aaPredicted RBP19.59■□□□□ 0.73
VRK3-206ENST00000594090 IFNL2Q8IZJ0 200 aa19.59■□□□□ 0.73
VRK3-206ENST00000594090 ITGB4P16144 1822 aa19.58■□□□□ 0.72
VRK3-206ENST00000594090 AMOTQ4VCS5 1084 aa19.58■□□□□ 0.72
VRK3-206ENST00000594090 ZNF316A6NFI3 1004 aaPredicted RBP19.57■□□□□ 0.72
VRK3-206ENST00000594090 U2SURPO15042 1029 aaKnown RBP19.57■□□□□ 0.72
VRK3-206ENST00000594090 RALBP1Q15311 655 aa19.57■□□□□ 0.72
VRK3-206ENST00000594090 ZNF530Q6P9A1 599 aaPredicted RBP19.56■□□□□ 0.72
VRK3-206ENST00000594090 TXNRD1Q16881 649 aa19.55■□□□□ 0.72
VRK3-206ENST00000594090 PROM2Q8N271 834 aa19.55■□□□□ 0.72
VRK3-206ENST00000594090 LY75O60449 1722 aa19.55■□□□□ 0.72
VRK3-206ENST00000594090 NUDCQ9Y266 331 aa19.53■□□□□ 0.72
VRK3-206ENST00000594090 KDM6AO15550 1401 aaPredicted RBP19.53■□□□□ 0.72
VRK3-206ENST00000594090 PAPPAQ13219 1627 aa19.52■□□□□ 0.71
VRK3-206ENST00000594090 HSP90AB1P08238 724 aaKnown RBP19.51■□□□□ 0.71
VRK3-206ENST00000594090 C1orf141Q5JVX7 400 aa19.51■□□□□ 0.71
VRK3-206ENST00000594090 MPRIPQ6WCQ1 1025 aa19.51■□□□□ 0.71
VRK3-206ENST00000594090 DCAF5Q96JK2 942 aa19.51■□□□□ 0.71
VRK3-206ENST00000594090 MYBBP1AQ9BQG0 1328 aaKnown RBP19.5■□□□□ 0.71
VRK3-206ENST00000594090 PSDA5PKW4 1024 aaPredicted RBP19.5■□□□□ 0.71
VRK3-206ENST00000594090 R3HDM1Q15032 1099 aaKnown RBP19.5■□□□□ 0.71
VRK3-206ENST00000594090 NBPF14Q5TI25 921 aa19.5■□□□□ 0.71
VRK3-206ENST00000594090 RSPH6AQ9H0K4 717 aa19.5■□□□□ 0.71
VRK3-206ENST00000594090 SCN11AQ9UI33 1791 aa19.49■□□□□ 0.71
VRK3-206ENST00000594090 U2AF1L5P0DN76 240 aaPredicted RBP19.49■□□□□ 0.71
VRK3-206ENST00000594090 U2AF1Q01081 240 aaKnown RBP eCLIP19.49■□□□□ 0.71
VRK3-206ENST00000594090 ANO8Q9HCE9 1232 aaPredicted RBP19.49■□□□□ 0.71
VRK3-206ENST00000594090 TMOD3Q9NYL9 352 aa19.49■□□□□ 0.71
VRK3-206ENST00000594090 MTHFSDQ2M296 383 aaKnown RBP19.48■□□□□ 0.71
VRK3-206ENST00000594090 AKAP4Q5JQC9 854 aa19.48■□□□□ 0.71
VRK3-206ENST00000594090 PIGBQ92521 554 aa19.48■□□□□ 0.71
VRK3-206ENST00000594090 PRKRIP1Q9H875 184 aaPredicted RBP19.48■□□□□ 0.71
VRK3-206ENST00000594090 VIRMAQ69YN4 1812 aaKnown RBP19.48■□□□□ 0.71
VRK3-206ENST00000594090 PALLDQ8WX93 1383 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 ADAMTS7Q9UKP4 1686 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 ERVV-2B6SEH9 535 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 PRKAR2BP31323 418 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 SLC27A3Q5K4L6 730 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 LRRC4BQ9NT99 713 aa19.47■□□□□ 0.71
VRK3-206ENST00000594090 MRC1P22897 1456 aa19.44■□□□□ 0.7
VRK3-206ENST00000594090 FCHSD2O94868 740 aa19.44■□□□□ 0.7
VRK3-206ENST00000594090 SMARCC1Q92922 1105 aaPredicted RBP19.44■□□□□ 0.7
VRK3-206ENST00000594090 CABP4P57796 275 aa19.43■□□□□ 0.7
VRK3-206ENST00000594090 GAS2L2Q8NHY3 880 aa19.43■□□□□ 0.7
VRK3-206ENST00000594090 C5P01031 1676 aa19.43■□□□□ 0.7
VRK3-206ENST00000594090 KCNQ4P56696 695 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 PHACTR3Q96KR7 559 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 CCNL1Q9UK58 526 aaPredicted RBP19.42■□□□□ 0.7
VRK3-206ENST00000594090 MAP3K5Q99683 1374 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 CASZ1Q86V15 1759 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 STK32BQ9NY57 414 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 ASAP1Q9ULH1 1129 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 TAF1LQ8IZX4 1826 aa19.42■□□□□ 0.7
VRK3-206ENST00000594090 RNMTO43148 476 aaKnown RBP19.41■□□□□ 0.7
VRK3-206ENST00000594090 SLC15A2Q16348 729 aa19.41■□□□□ 0.7
VRK3-206ENST00000594090 LGR6Q9HBX8 967 aa19.41■□□□□ 0.7
VRK3-206ENST00000594090 ATG3Q9NT62 314 aa19.41■□□□□ 0.7
VRK3-206ENST00000594090 ZNF827Q17R98 1081 aa19.4■□□□□ 0.7
VRK3-206ENST00000594090 QSER1Q2KHR3 1735 aa19.4■□□□□ 0.7
VRK3-206ENST00000594090 TUBGCP6Q96RT7 1819 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms