RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 OTUD7AQ8TE49 926 aaPredicted RBP20.44■□□□□ 0.86
LIG1-206ENST00000594067 NAP1L5Q96NT1 182 aaPredicted RBP20.44■□□□□ 0.86
LIG1-206ENST00000594067 GBP4Q96PP9 640 aa20.44■□□□□ 0.86
LIG1-206ENST00000594067 ROBO2Q9HCK4 1378 aa20.44■□□□□ 0.86
LIG1-206ENST00000594067 TECPR2O15040 1411 aa20.44■□□□□ 0.86
LIG1-206ENST00000594067 APBB1O00213 710 aa20.43■□□□□ 0.86
LIG1-206ENST00000594067 GAS2L3Q86XJ1 694 aa20.43■□□□□ 0.86
LIG1-206ENST00000594067 HDGFP51858 240 aaKnown RBP20.43■□□□□ 0.86
LIG1-206ENST00000594067 ACEP12821 1306 aa20.43■□□□□ 0.86
LIG1-206ENST00000594067 RGS12O14924 1447 aa20.42■□□□□ 0.86
LIG1-206ENST00000594067 CEP85Q6P2H3 762 aa20.42■□□□□ 0.86
LIG1-206ENST00000594067 AKAP12Q02952 1782 aa20.42■□□□□ 0.86
LIG1-206ENST00000594067 ATP10DQ9P241 1426 aa20.41■□□□□ 0.86
LIG1-206ENST00000594067 SMARCA5O60264 1052 aaPredicted RBP20.41■□□□□ 0.86
LIG1-206ENST00000594067 MSH6P52701 1360 aa20.41■□□□□ 0.86
LIG1-206ENST00000594067 MIS18AQ9NYP9 233 aa20.41■□□□□ 0.86
LIG1-206ENST00000594067 ITSN1Q15811 1721 aa20.41■□□□□ 0.86
LIG1-206ENST00000594067 ESPNB1AK53 854 aa20.4■□□□□ 0.86
LIG1-206ENST00000594067 RPAP2Q8IXW5 612 aaPredicted RBP20.4■□□□□ 0.86
LIG1-206ENST00000594067 MEIS3Q99687 375 aa20.4■□□□□ 0.86
LIG1-206ENST00000594067 ERBB4Q15303 1308 aa20.4■□□□□ 0.86
LIG1-206ENST00000594067 SSFA2P28290 1259 aa20.4■□□□□ 0.86
LIG1-206ENST00000594067 HAP1P54257 671 aaPredicted RBP20.4■□□□□ 0.86
LIG1-206ENST00000594067 NRKQ7Z2Y5 1582 aa20.39■□□□□ 0.85
LIG1-206ENST00000594067 SKOR2Q2VWA4 1001 aaPredicted RBP20.39■□□□□ 0.85
LIG1-206ENST00000594067 RTL1A6NKG5 1358 aa20.38■□□□□ 0.85
LIG1-206ENST00000594067 SLC4A2P04920 1241 aa20.38■□□□□ 0.85
LIG1-206ENST00000594067 KIAA0232Q92628 1395 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 OVOS2A0A0J9YW53 1432 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 OVOS2Q6IE36 1432 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 FOXO3O43524 673 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 USP26Q9BXU7 913 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 TNRQ92752 1358 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 PTPRCP08575 1304 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 SDSP20132 328 aa20.37■□□□□ 0.85
LIG1-206ENST00000594067 RABEP1Q15276 862 aa20.36■□□□□ 0.85
LIG1-206ENST00000594067 TMEM2Q9UHN6 1383 aa20.36■□□□□ 0.85
LIG1-206ENST00000594067 PLEKHG3A1L390 1219 aa20.35■□□□□ 0.85
LIG1-206ENST00000594067 SLC4A10Q6U841 1118 aa20.35■□□□□ 0.85
LIG1-206ENST00000594067 CRB1P82279 1406 aa20.35■□□□□ 0.85
LIG1-206ENST00000594067 G2E3Q7L622 706 aa20.34■□□□□ 0.85
LIG1-206ENST00000594067 F6X3S4 739 aa20.34■□□□□ 0.85
LIG1-206ENST00000594067 PTMSP20962 102 aa20.34■□□□□ 0.85
LIG1-206ENST00000594067 USP6P35125 1406 aa20.34■□□□□ 0.85
LIG1-206ENST00000594067 MAP3K19Q56UN5 1328 aa20.34■□□□□ 0.85
LIG1-206ENST00000594067 ADAMTS13Q76LX8 1427 aa20.33■□□□□ 0.85
LIG1-206ENST00000594067 MTHFSDQ2M296 383 aaKnown RBP20.33■□□□□ 0.85
LIG1-206ENST00000594067 PEAK1Q9H792 1746 aa20.33■□□□□ 0.85
LIG1-206ENST00000594067 TSPYL4Q9UJ04 414 aa20.33■□□□□ 0.84
LIG1-206ENST00000594067 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.32■□□□□ 0.84
LIG1-206ENST00000594067 TRIM44Q96DX7 344 aaPredicted RBP20.32■□□□□ 0.84
LIG1-206ENST00000594067 LTKP29376 864 aa20.31■□□□□ 0.84
LIG1-206ENST00000594067 RTF1Q92541 710 aaKnown RBP20.31■□□□□ 0.84
LIG1-206ENST00000594067 CASC1Q6TDU7 716 aa20.31■□□□□ 0.84
LIG1-206ENST00000594067 CLEC17AQ6ZS10 378 aa20.31■□□□□ 0.84
LIG1-206ENST00000594067 SLC26A8Q96RN1 970 aa20.31■□□□□ 0.84
LIG1-206ENST00000594067 BAG4O95429 457 aaKnown RBP20.3■□□□□ 0.84
LIG1-206ENST00000594067 USP31Q70CQ4 1352 aa20.3■□□□□ 0.84
LIG1-206ENST00000594067 GOLGA6L22H0YM25 854 aa20.3■□□□□ 0.84
LIG1-206ENST00000594067 HMMRO75330 724 aa20.29■□□□□ 0.84
LIG1-206ENST00000594067 ARHGEF10O15013 1369 aa20.28■□□□□ 0.84
LIG1-206ENST00000594067 RGPD1P0DJD0 1748 aa20.27■□□□□ 0.84
LIG1-206ENST00000594067 DDX49Q9Y6V7 483 aaKnown RBP20.27■□□□□ 0.83
LIG1-206ENST00000594067 CCT4P50991 539 aaKnown RBP20.26■□□□□ 0.83
LIG1-206ENST00000594067 HSP90AA2PQ14568 343 aaPredicted RBP20.26■□□□□ 0.83
LIG1-206ENST00000594067 TOPAZ1Q8N9V7 1692 aa20.26■□□□□ 0.83
LIG1-206ENST00000594067 RRP9O43818 475 aaKnown RBP20.26■□□□□ 0.83
LIG1-206ENST00000594067 PKP1Q13835 747 aa20.26■□□□□ 0.83
LIG1-206ENST00000594067 UBR1Q8IWV7 1749 aa20.26■□□□□ 0.83
LIG1-206ENST00000594067 EYA1Q99502 592 aa20.26■□□□□ 0.83
LIG1-206ENST00000594067 EXOC6BQ9Y2D4 811 aa20.26■□□□□ 0.83
LIG1-206ENST00000594067 AMPHP49418 695 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 KLHL40Q2TBA0 621 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 MCTP1Q6DN14 999 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 RIMS1Q86UR5 1692 aaKnown RBP20.25■□□□□ 0.83
LIG1-206ENST00000594067 SSH2Q76I76 1423 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 PTPRUQ92729 1446 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 REC8O95072 547 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 PDE1AP54750 535 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 TSHZ3Q63HK5 1081 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 PPP1R9BQ96SB3 815 aa20.25■□□□□ 0.83
LIG1-206ENST00000594067 ERC2O15083 957 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 ST18O60284 1047 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 NUCB2P80303 420 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 NECTIN2Q92692 538 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 PLEKHG1Q9ULL1 1385 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 CCDC173Q0VFZ6 552 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 ZGPATQ8N5A5 531 aaKnown RBP20.24■□□□□ 0.83
LIG1-206ENST00000594067 NGDNQ8NEJ9 315 aaKnown RBP20.24■□□□□ 0.83
LIG1-206ENST00000594067 IBTKQ9P2D0 1353 aaPredicted RBP20.24■□□□□ 0.83
LIG1-206ENST00000594067 NALCNQ8IZF0 1738 aa20.24■□□□□ 0.83
LIG1-206ENST00000594067 FLT4P35916 1363 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 GNAI2P04899 355 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 STK31Q9BXU1 1019 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 AK9Q5TCS8 1911 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 SBNO1A3KN83 1393 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 NASPP49321 788 aaPredicted RBP20.23■□□□□ 0.83
LIG1-206ENST00000594067 AMOTL2Q9Y2J4 779 aa20.23■□□□□ 0.83
LIG1-206ENST00000594067 CYP2E1P05181 493 aaPredicted RBP20.22■□□□□ 0.83
LIG1-206ENST00000594067 TTC21AQ8NDW8 1320 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms