RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 EZH2Q15910 746 aaKnown RBP21.46■■□□□ 1.03
LIG3-215ENST00000592690 CC2D1BQ5T0F9 858 aaKnown RBP21.45■■□□□ 1.02
LIG3-215ENST00000592690 CAMKK2Q96RR4 588 aa21.45■■□□□ 1.02
LIG3-215ENST00000592690 EIF4A2Q14240 407 aaKnown RBP21.44■■□□□ 1.02
LIG3-215ENST00000592690 DDX54Q8TDD1 881 aaKnown RBP21.43■■□□□ 1.02
LIG3-215ENST00000592690 RAPGEF4Q8WZA2 1011 aa21.43■■□□□ 1.02
LIG3-215ENST00000592690 BCL11BQ9C0K0 894 aaPredicted RBP21.43■■□□□ 1.02
LIG3-215ENST00000592690 ZCRB1Q8TBF4 217 aaKnown RBP21.42■■□□□ 1.02
LIG3-215ENST00000592690 PARD3Q8TEW0 1356 aa21.42■■□□□ 1.02
LIG3-215ENST00000592690 EYA1Q99502 592 aa21.42■■□□□ 1.02
LIG3-215ENST00000592690 NPC1L1Q9UHC9 1359 aa21.42■■□□□ 1.02
LIG3-215ENST00000592690 KCNQ2O43526 872 aa21.41■■□□□ 1.02
LIG3-215ENST00000592690 TATP17735 454 aaPredicted RBP21.41■■□□□ 1.02
LIG3-215ENST00000592690 ACSBG1Q96GR2 724 aa21.41■■□□□ 1.02
LIG3-215ENST00000592690 CNGB1Q14028 1251 aaPredicted RBP21.4■■□□□ 1.02
LIG3-215ENST00000592690 TOGARAM1Q9Y4F4 1720 aa21.39■■□□□ 1.01
LIG3-215ENST00000592690 ITGB4P16144 1822 aa21.37■■□□□ 1.01
LIG3-215ENST00000592690 IGSF1Q8N6C5 1336 aa21.36■■□□□ 1.01
LIG3-215ENST00000592690 PLSCR1O15162 318 aa21.35■■□□□ 1.01
LIG3-215ENST00000592690 MTHFSP49914 203 aa21.35■■□□□ 1.01
LIG3-215ENST00000592690 PCDH11XQ9BZA7 1347 aa21.34■■□□□ 1.01
LIG3-215ENST00000592690 PCDH11YQ9BZA8 1340 aa21.34■■□□□ 1.01
LIG3-215ENST00000592690 PSDA5PKW4 1024 aaPredicted RBP21.33■■□□□ 1.01
LIG3-215ENST00000592690 LY75O60449 1722 aa21.32■■□□□ 1
LIG3-215ENST00000592690 CYP27B1O15528 508 aa21.32■■□□□ 1
LIG3-215ENST00000592690 COL3A1P02461 1466 aaPredicted RBP21.32■■□□□ 1
LIG3-215ENST00000592690 IL13P35225 146 aa21.31■■□□□ 1
LIG3-215ENST00000592690 AEBP1Q8IUX7 1158 aa21.3■■□□□ 1
LIG3-215ENST00000592690 PROM2Q8N271 834 aa21.3■■□□□ 1
LIG3-215ENST00000592690 PRIM1P49642 420 aaKnown RBP21.29■■□□□ 1
LIG3-215ENST00000592690 R3HDM1Q15032 1099 aaKnown RBP21.29■■□□□ 1
LIG3-215ENST00000592690 SYTL4Q96C24 671 aaPredicted RBP21.29■■□□□ 1
LIG3-215ENST00000592690 SPG7Q9UQ90 795 aa21.29■■□□□ 1
LIG3-215ENST00000592690 VIRMAQ69YN4 1812 aaKnown RBP21.28■■□□□ 1
LIG3-215ENST00000592690 TXNRD1Q16881 649 aa21.28■■□□□ 1
LIG3-215ENST00000592690 PAPPAQ13219 1627 aa21.28■■□□□ 1
LIG3-215ENST00000592690 SRCAPQ6ZRS2 3230 aa21.27■■□□□ 1
LIG3-215ENST00000592690 KDRP35968 1356 aa21.27■■□□□ 1
LIG3-215ENST00000592690 PLEKHG2Q9H7P9 1386 aa21.27■■□□□ 1
LIG3-215ENST00000592690 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.27■■□□□ 1
LIG3-215ENST00000592690 SULT6B1Q6IMI4 303 aa21.25■□□□□ 0.99
LIG3-215ENST00000592690 ANO8Q9HCE9 1232 aaPredicted RBP21.25■□□□□ 0.99
LIG3-215ENST00000592690 DIAPH1O60610 1272 aaKnown RBP21.24■□□□□ 0.99
LIG3-215ENST00000592690 ZEB1P37275 1124 aaPredicted RBP21.24■□□□□ 0.99
LIG3-215ENST00000592690 NBPF14Q5TI25 921 aa21.24■□□□□ 0.99
LIG3-215ENST00000592690 LRP5O75197 1615 aa21.24■□□□□ 0.99
LIG3-215ENST00000592690 CASZ1Q86V15 1759 aa21.23■□□□□ 0.99
LIG3-215ENST00000592690 PHKG2P15735 406 aa21.23■□□□□ 0.99
LIG3-215ENST00000592690 NKX1-1Q15270 411 aaPredicted RBP21.23■□□□□ 0.99
LIG3-215ENST00000592690 IFNL2Q8IZJ0 200 aa21.22■□□□□ 0.99
LIG3-215ENST00000592690 TUBGCP6Q96RT7 1819 aa21.22■□□□□ 0.99
LIG3-215ENST00000592690 SCN11AQ9UI33 1791 aa21.21■□□□□ 0.99
LIG3-215ENST00000592690 TAF1LQ8IZX4 1826 aa21.21■□□□□ 0.99
LIG3-215ENST00000592690 PPP2R1AP30153 589 aa21.21■□□□□ 0.99
LIG3-215ENST00000592690 HMOX1P09601 288 aa21.2■□□□□ 0.98
LIG3-215ENST00000592690 PLEKHO1Q53GL0 409 aaPredicted RBP21.2■□□□□ 0.98
LIG3-215ENST00000592690 DDX10Q13206 875 aaKnown RBP21.19■□□□□ 0.98
LIG3-215ENST00000592690 ZNF530Q6P9A1 599 aaPredicted RBP21.19■□□□□ 0.98
LIG3-215ENST00000592690 MPRIPQ6WCQ1 1025 aa21.19■□□□□ 0.98
LIG3-215ENST00000592690 LRRC4BQ9NT99 713 aa21.19■□□□□ 0.98
LIG3-215ENST00000592690 C5P01031 1676 aa21.18■□□□□ 0.98
LIG3-215ENST00000592690 AMOTQ4VCS5 1084 aa21.18■□□□□ 0.98
LIG3-215ENST00000592690 KDM6AO15550 1401 aaPredicted RBP21.18■□□□□ 0.98
LIG3-215ENST00000592690 QSER1Q2KHR3 1735 aa21.18■□□□□ 0.98
LIG3-215ENST00000592690 KCNQ4P56696 695 aa21.17■□□□□ 0.98
LIG3-215ENST00000592690 U2SURPO15042 1029 aaKnown RBP21.15■□□□□ 0.98
LIG3-215ENST00000592690 PIGBQ92521 554 aa21.15■□□□□ 0.98
LIG3-215ENST00000592690 CFAP53Q96M91 514 aa21.15■□□□□ 0.98
LIG3-215ENST00000592690 STK32BQ9NY57 414 aa21.15■□□□□ 0.98
LIG3-215ENST00000592690 PALLDQ8WX93 1383 aa21.14■□□□□ 0.98
LIG3-215ENST00000592690 SLC15A2Q16348 729 aa21.14■□□□□ 0.97
LIG3-215ENST00000592690 SLC27A3Q5K4L6 730 aa21.14■□□□□ 0.97
LIG3-215ENST00000592690 ZNF827Q17R98 1081 aa21.13■□□□□ 0.97
LIG3-215ENST00000592690 TMOD3Q9NYL9 352 aa21.13■□□□□ 0.97
LIG3-215ENST00000592690 ADAMTS7Q9UKP4 1686 aa21.12■□□□□ 0.97
LIG3-215ENST00000592690 C1orf141Q5JVX7 400 aa21.12■□□□□ 0.97
LIG3-215ENST00000592690 DCAF5Q96JK2 942 aa21.12■□□□□ 0.97
LIG3-215ENST00000592690 PDGFDQ9GZP0 370 aaPredicted RBP21.12■□□□□ 0.97
LIG3-215ENST00000592690 CCNL1Q9UK58 526 aaPredicted RBP21.12■□□□□ 0.97
LIG3-215ENST00000592690 HSP90AB1P08238 724 aaKnown RBP21.11■□□□□ 0.97
LIG3-215ENST00000592690 ERVV-2B6SEH9 535 aa21.09■□□□□ 0.97
LIG3-215ENST00000592690 MTHFSDQ2M296 383 aaKnown RBP21.09■□□□□ 0.97
LIG3-215ENST00000592690 AKT1S1Q96B36 256 aa21.09■□□□□ 0.97
LIG3-215ENST00000592690 C4BP0C0L5 1744 aa21.09■□□□□ 0.97
LIG3-215ENST00000592690 SMARCC1Q92922 1105 aaPredicted RBP21.08■□□□□ 0.97
LIG3-215ENST00000592690 ASAP1Q9ULH1 1129 aa21.08■□□□□ 0.97
LIG3-215ENST00000592690 AKAP4Q5JQC9 854 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 RSPH6AQ9H0K4 717 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 NUDCQ9Y266 331 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 ZNF831Q5JPB2 1677 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 UBR3Q6ZT12 1888 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 MRC1P22897 1456 aa21.07■□□□□ 0.96
LIG3-215ENST00000592690 ATG3Q9NT62 314 aa21.06■□□□□ 0.96
LIG3-215ENST00000592690 COL5A3P25940 1745 aaPredicted RBP21.06■□□□□ 0.96
LIG3-215ENST00000592690 SIPA1L3O60292 1781 aaPredicted RBP21.05■□□□□ 0.96
LIG3-215ENST00000592690 CABP4P57796 275 aa21.05■□□□□ 0.96
LIG3-215ENST00000592690 RALBP1Q15311 655 aa21.05■□□□□ 0.96
LIG3-215ENST00000592690 DLG5Q8TDM6 1919 aa21.04■□□□□ 0.96
LIG3-215ENST00000592690 U2AF1L5P0DN76 240 aaPredicted RBP21.04■□□□□ 0.96
LIG3-215ENST00000592690 PRKAR2BP31323 418 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms