RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NHSQ6T4R5 1651 aa16.1■□□□□ 0.17
LIG3-213ENST00000590630 PLEKHG2Q9H7P9 1386 aa16.1■□□□□ 0.17
LIG3-213ENST00000590630 RGPD3A6NKT7 1758 aaPredicted RBP16.08■□□□□ 0.17
LIG3-213ENST00000590630 RGPD4Q7Z3J3 1758 aa16.08■□□□□ 0.17
LIG3-213ENST00000590630 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
LIG3-213ENST00000590630 IL13P35225 146 aa16.07■□□□□ 0.16
LIG3-213ENST00000590630 DEFB132Q7Z7B7 95 aa16.07■□□□□ 0.16
LIG3-213ENST00000590630 DDX54Q8TDD1 881 aaKnown RBP16.07■□□□□ 0.16
LIG3-213ENST00000590630 PCDH11XQ9BZA7 1347 aa16.07■□□□□ 0.16
LIG3-213ENST00000590630 PCDH11YQ9BZA8 1340 aa16.07■□□□□ 0.16
LIG3-213ENST00000590630 DOT1LQ8TEK3 1739 aa16.06■□□□□ 0.16
LIG3-213ENST00000590630 COL3A1P02461 1466 aaPredicted RBP16.06■□□□□ 0.16
LIG3-213ENST00000590630 PARD3Q8TEW0 1356 aa16.06■□□□□ 0.16
LIG3-213ENST00000590630 BCL11BQ9C0K0 894 aaPredicted RBP16.06■□□□□ 0.16
LIG3-213ENST00000590630 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.06■□□□□ 0.164e-6■□□□□ 11.2
LIG3-213ENST00000590630 KDRP35968 1356 aa16.05■□□□□ 0.16
LIG3-213ENST00000590630 DIAPH1O60610 1272 aaKnown RBP16.05■□□□□ 0.16
LIG3-213ENST00000590630 APBA3O96018 575 aa16.05■□□□□ 0.16
LIG3-213ENST00000590630 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
LIG3-213ENST00000590630 BTAF1O14981 1849 aa16.04■□□□□ 0.16
LIG3-213ENST00000590630 PPP2R1AP30153 589 aa16.04■□□□□ 0.16
LIG3-213ENST00000590630 CFAP53Q96M91 514 aa16.04■□□□□ 0.16
LIG3-213ENST00000590630 RREB1Q92766 1687 aa16.03■□□□□ 0.16
LIG3-213ENST00000590630 EN1Q05925 392 aaPredicted RBP16.03■□□□□ 0.16
LIG3-213ENST00000590630 SULT6B1Q6IMI4 303 aa16.02■□□□□ 0.16
LIG3-213ENST00000590630 CAMKK2Q96RR4 588 aa16.02■□□□□ 0.16
LIG3-213ENST00000590630 ZNF316A6NFI3 1004 aaPredicted RBP16.01■□□□□ 0.15
LIG3-213ENST00000590630 PLSCR1O15162 318 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 CYP27B1O15528 508 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 KCNQ2O43526 872 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 RALBP1Q15311 655 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 PTF1AQ7RTS3 328 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 AEBP1Q8IUX7 1158 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 ACSBG1Q96GR2 724 aa16.01■□□□□ 0.15
LIG3-213ENST00000590630 AMOTQ4VCS5 1084 aa16■□□□□ 0.15
LIG3-213ENST00000590630 ITGB4P16144 1822 aa16■□□□□ 0.15
LIG3-213ENST00000590630 NUP188Q5SRE5 1749 aa15.99■□□□□ 0.15
LIG3-213ENST00000590630 TOGARAM1Q9Y4F4 1720 aa15.99■□□□□ 0.15
LIG3-213ENST00000590630 EZH2Q15910 746 aaKnown RBP15.99■□□□□ 0.15
LIG3-213ENST00000590630 PLEKHO1Q53GL0 409 aaPredicted RBP15.99■□□□□ 0.15
LIG3-213ENST00000590630 NKX1-1Q15270 411 aaPredicted RBP15.98■□□□□ 0.15
LIG3-213ENST00000590630 IFNL2Q8IZJ0 200 aa15.98■□□□□ 0.15
LIG3-213ENST00000590630 U2SURPO15042 1029 aaKnown RBP15.97■□□□□ 0.15
LIG3-213ENST00000590630 PHKG2P15735 406 aa15.97■□□□□ 0.15
LIG3-213ENST00000590630 PRIM1P49642 420 aaKnown RBP15.97■□□□□ 0.15
LIG3-213ENST00000590630 SYTL4Q96C24 671 aaPredicted RBP15.97■□□□□ 0.15
LIG3-213ENST00000590630 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
LIG3-213ENST00000590630 SRCAPQ6ZRS2 3230 aa15.96■□□□□ 0.15
LIG3-213ENST00000590630 HMOX1P09601 288 aa15.96■□□□□ 0.15
LIG3-213ENST00000590630 ZNF530Q6P9A1 599 aaPredicted RBP15.95■□□□□ 0.14
LIG3-213ENST00000590630 VIRMAQ69YN4 1812 aaKnown RBP15.95■□□□□ 0.14
LIG3-213ENST00000590630 LY75O60449 1722 aa15.94■□□□□ 0.14
LIG3-213ENST00000590630 HSP90AB1P08238 724 aaKnown RBP15.94■□□□□ 0.14
LIG3-213ENST00000590630 MYBBP1AQ9BQG0 1328 aaKnown RBP15.94■□□□□ 0.14
LIG3-213ENST00000590630 SCN11AQ9UI33 1791 aa15.93■□□□□ 0.14
LIG3-213ENST00000590630 C1orf141Q5JVX7 400 aa15.93■□□□□ 0.14
LIG3-213ENST00000590630 DCAF5Q96JK2 942 aa15.93■□□□□ 0.14
LIG3-213ENST00000590630 TXNRD1Q16881 649 aa15.92■□□□□ 0.14
LIG3-213ENST00000590630 U2AF1L5P0DN76 240 aaPredicted RBP15.91■□□□□ 0.14
LIG3-213ENST00000590630 U2AF1Q01081 240 aaKnown RBP eCLIP15.91■□□□□ 0.14
LIG3-213ENST00000590630 MPRIPQ6WCQ1 1025 aa15.91■□□□□ 0.14
LIG3-213ENST00000590630 PROM2Q8N271 834 aa15.91■□□□□ 0.14
LIG3-213ENST00000590630 PRKRIP1Q9H875 184 aaPredicted RBP15.91■□□□□ 0.14
LIG3-213ENST00000590630 AKAP4Q5JQC9 854 aa15.9■□□□□ 0.14
LIG3-213ENST00000590630 NBPF14Q5TI25 921 aa15.9■□□□□ 0.14
LIG3-213ENST00000590630 RSPH6AQ9H0K4 717 aa15.9■□□□□ 0.14
LIG3-213ENST00000590630 KDM6AO15550 1401 aaPredicted RBP15.9■□□□□ 0.14
LIG3-213ENST00000590630 ERVV-2B6SEH9 535 aa15.89■□□□□ 0.13
LIG3-213ENST00000590630 FCHSD2O94868 740 aa15.89■□□□□ 0.13
LIG3-213ENST00000590630 SLC27A3Q5K4L6 730 aa15.89■□□□□ 0.13
LIG3-213ENST00000590630 TMOD3Q9NYL9 352 aa15.89■□□□□ 0.13
LIG3-213ENST00000590630 ADAMTS7Q9UKP4 1686 aa15.89■□□□□ 0.13
LIG3-213ENST00000590630 PAPPAQ13219 1627 aa15.88■□□□□ 0.13
LIG3-213ENST00000590630 PRKAR2BP31323 418 aa15.88■□□□□ 0.13
LIG3-213ENST00000590630 MTHFSDQ2M296 383 aaKnown RBP15.88■□□□□ 0.13
LIG3-213ENST00000590630 PIGBQ92521 554 aa15.88■□□□□ 0.13
LIG3-213ENST00000590630 GAS2L2Q8NHY3 880 aa15.87■□□□□ 0.13
LIG3-213ENST00000590630 SMARCC1Q92922 1105 aaPredicted RBP15.87■□□□□ 0.13
LIG3-213ENST00000590630 TAF1LQ8IZX4 1826 aa15.86■□□□□ 0.13
LIG3-213ENST00000590630 PALLDQ8WX93 1383 aa15.86■□□□□ 0.13
LIG3-213ENST00000590630 MRC1P22897 1456 aa15.85■□□□□ 0.13
LIG3-213ENST00000590630 R3HDM1Q15032 1099 aaKnown RBP15.85■□□□□ 0.13
LIG3-213ENST00000590630 C5P01031 1676 aa15.85■□□□□ 0.13
LIG3-213ENST00000590630 MAP3K5Q99683 1374 aa15.85■□□□□ 0.13
LIG3-213ENST00000590630 PSDA5PKW4 1024 aaPredicted RBP15.84■□□□□ 0.13
LIG3-213ENST00000590630 HMGB2P26583 209 aaKnown RBP15.84■□□□□ 0.13
LIG3-213ENST00000590630 CABP4P57796 275 aa15.84■□□□□ 0.13
LIG3-213ENST00000590630 PHACTR3Q96KR7 559 aa15.84■□□□□ 0.13
LIG3-213ENST00000590630 PNNQ9H307 717 aaKnown RBP15.84■□□□□ 0.13
LIG3-213ENST00000590630 ANO8Q9HCE9 1232 aaPredicted RBP15.84■□□□□ 0.13
LIG3-213ENST00000590630 LRRC4BQ9NT99 713 aa15.84■□□□□ 0.13
LIG3-213ENST00000590630 CCNL1Q9UK58 526 aaPredicted RBP15.84■□□□□ 0.13
LIG3-213ENST00000590630 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.13
LIG3-213ENST00000590630 QSER1Q2KHR3 1735 aa15.83■□□□□ 0.13
LIG3-213ENST00000590630 GNAT3A8MTJ3 354 aa15.83■□□□□ 0.12
LIG3-213ENST00000590630 NEFMP07197 916 aa15.83■□□□□ 0.12
LIG3-213ENST00000590630 STK32BQ9NY57 414 aa15.83■□□□□ 0.12
LIG3-213ENST00000590630 DLG5Q8TDM6 1919 aa15.83■□□□□ 0.12
LIG3-213ENST00000590630 RNMTO43148 476 aaKnown RBP15.82■□□□□ 0.12
LIG3-213ENST00000590630 ASAP1Q9ULH1 1129 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms