RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	LRRC37A3	O60309	1634 aa		19.83	■□□□□ 0.76
DDX39A-209	ENST00000589318	ABCC6	O95255	1503 aa		19.82	■□□□□ 0.76
DDX39A-209	ENST00000589318	LRRC59	Q96AG4	307 aa	Known RBP	19.82	■□□□□ 0.76
DDX39A-209	ENST00000589318	MCM10	Q7L590	875 aa		19.82	■□□□□ 0.76
DDX39A-209	ENST00000589318	ABCA3	Q99758	1704 aa		19.82	■□□□□ 0.76
DDX39A-209	ENST00000589318	MBIP	Q9NS73	344 aa		19.82	■□□□□ 0.76
DDX39A-209	ENST00000589318	CRB1	P82279	1406 aa		19.81	■□□□□ 0.76
DDX39A-209	ENST00000589318	GAS2L2	Q8NHY3	880 aa		19.81	■□□□□ 0.76
DDX39A-209	ENST00000589318	ANKRD24	Q8TF21	1146 aa		19.81	■□□□□ 0.76
DDX39A-209	ENST00000589318	USP35	Q9P2H5	1018 aa		19.81	■□□□□ 0.76
DDX39A-209	ENST00000589318	LAS1L	Q9Y4W2	734 aa	Known RBP	19.81	■□□□□ 0.76
DDX39A-209	ENST00000589318	BCL2L13	Q9BXK5	485 aa		19.8	■□□□□ 0.76
DDX39A-209	ENST00000589318	ERBB3	P21860	1342 aa		19.8	■□□□□ 0.76
DDX39A-209	ENST00000589318	CPD	O75976	1380 aa		19.79	■□□□□ 0.76
DDX39A-209	ENST00000589318	NBR1	Q14596	966 aa		19.79	■□□□□ 0.76
DDX39A-209	ENST00000589318	UBE2Q2	Q8WVN8	375 aa		19.79	■□□□□ 0.76
DDX39A-209	ENST00000589318	CCDC136	Q96JN2	1154 aa		19.78	■□□□□ 0.76
DDX39A-209	ENST00000589318	ZBTB47	Q9UFB7	747 aa	Predicted RBP	19.78	■□□□□ 0.76
DDX39A-209	ENST00000589318	FAM208A	Q9UK61	1670 aa	Known RBP	19.77	■□□□□ 0.76
DDX39A-209	ENST00000589318	ROBO1	Q9Y6N7	1651 aa		19.77	■□□□□ 0.76
DDX39A-209	ENST00000589318	CHL1	O00533	1208 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	HTATSF1	O43719	755 aa	Known RBP	19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	PDE3A	Q14432	1141 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	SSH1	Q8WYL5	1049 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	KIAA0232	Q92628	1395 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	MAP3K5	Q99683	1374 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	TSPYL6	Q8N831	410 aa		19.76	■□□□□ 0.75
DDX39A-209	ENST00000589318	VAMP4	O75379	141 aa		19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	FRAT1	Q92837	279 aa	Predicted RBP	19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	GNAT3	A8MTJ3	354 aa		19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	CHRNA2	Q15822	529 aa		19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	RTF1	Q92541	710 aa	Known RBP	19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	TNN	Q9UQP3	1299 aa		19.74	■□□□□ 0.75
DDX39A-209	ENST00000589318	ZNF428	Q96B54	188 aa		19.73	■□□□□ 0.75
DDX39A-209	ENST00000589318	SMC4	Q9NTJ3	1288 aa		19.73	■□□□□ 0.75
DDX39A-209	ENST00000589318	ALDH1L2	Q3SY69	923 aa		19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	C8orf58	Q8NAV2	365 aa		19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	AHDC1	Q5TGY3	1603 aa	Predicted RBP	19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	VIRMA	Q69YN4	1812 aa	Known RBP	19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	RLBP1	P12271	317 aa		19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	CANX	P27824	592 aa	Known RBP	19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	IL17RE	Q8NFR9	667 aa		19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	PANK1	Q8TE04	598 aa		19.72	■□□□□ 0.75
DDX39A-209	ENST00000589318	BRPF1	P55201	1214 aa	Predicted RBP	19.7	■□□□□ 0.74
DDX39A-209	ENST00000589318	TWISTNB	Q3B726	338 aa	Predicted RBP	19.7	■□□□□ 0.74
DDX39A-209	ENST00000589318	CEMIP	Q8WUJ3	1361 aa		19.7	■□□□□ 0.74
DDX39A-209	ENST00000589318	ELL2	O00472	640 aa	Predicted RBP	19.68	■□□□□ 0.74
DDX39A-209	ENST00000589318	ZKSCAN2	Q63HK3	967 aa		19.68	■□□□□ 0.74
DDX39A-209	ENST00000589318	KRT24	Q2M2I5	525 aa		19.68	■□□□□ 0.74
DDX39A-209	ENST00000589318	COG6	Q9Y2V7	657 aa		19.68	■□□□□ 0.74
DDX39A-209	ENST00000589318	AMOT	Q4VCS5	1084 aa		19.67	■□□□□ 0.74
DDX39A-209	ENST00000589318	PLEKHO1	Q53GL0	409 aa	Predicted RBP	19.67	■□□□□ 0.74
DDX39A-209	ENST00000589318	MIS18A	Q9NYP9	233 aa		19.67	■□□□□ 0.74
DDX39A-209	ENST00000589318	KIF16B	Q96L93	1317 aa		19.67	■□□□□ 0.74
DDX39A-209	ENST00000589318	ADAMTS7	Q9UKP4	1686 aa		19.67	■□□□□ 0.74
DDX39A-209	ENST00000589318	TRIM27	P14373	513 aa		19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	NLRP2	Q9NX02	1062 aa		19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	NOB1	Q9ULX3	412 aa	Known RBP	19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	MEGF6	O75095	1541 aa		19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	AKAP4	Q5JQC9	854 aa		19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	MRPL50	Q8N5N7	158 aa	Known RBP	19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	PRDM11	Q9NQV5	511 aa		19.66	■□□□□ 0.74
DDX39A-209	ENST00000589318	COL22A1	Q8NFW1	1626 aa	Predicted RBP	19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	ZNF530	Q6P9A1	599 aa	Predicted RBP	19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	ATF7IP	Q6VMQ6	1270 aa		19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	CLUAP1	Q96AJ1	413 aa		19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	TSPYL4	Q9UJ04	414 aa		19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	COL5A2	P05997	1499 aa	Predicted RBP	19.65	■□□□□ 0.74
DDX39A-209	ENST00000589318	LGR6	Q9HBX8	967 aa		19.64	■□□□□ 0.73
DDX39A-209	ENST00000589318	PKD1L3	Q7Z443	1732 aa		19.64	■□□□□ 0.73
DDX39A-209	ENST00000589318	KDM3B	Q7LBC6	1761 aa		19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	DZIP1L	Q8IYY4	767 aa	Known RBP	19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	PLEKHG2	Q9H7P9	1386 aa		19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	SIPA1L3	O60292	1781 aa	Predicted RBP	19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	CSB-PGBD3	P0DP91	1061 aa		19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	TAF7	Q15545	349 aa	Predicted RBP	19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	BABAM1	Q9NWV8	329 aa		19.63	■□□□□ 0.73
DDX39A-209	ENST00000589318	OVOS2	A0A0G2JMS6	1433 aa		19.62	■□□□□ 0.73
DDX39A-209	ENST00000589318	KDM2B	Q8NHM5	1336 aa		19.62	■□□□□ 0.73
DDX39A-209	ENST00000589318	HAP1	P54257	671 aa	Predicted RBP	19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	MVP	Q14764	893 aa	Known RBP	19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	WDR17	Q8IZU2	1322 aa		19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	COL16A1	Q07092	1604 aa	Predicted RBP	19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	TCERG1	O14776	1098 aa	Known RBP	19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	IPO8	O15397	1037 aa	Known RBP	19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	MS4A1	P11836	297 aa		19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	RAPGEF4	Q8WZA2	1011 aa		19.61	■□□□□ 0.73
DDX39A-209	ENST00000589318	FTSJ3	Q8IY81	847 aa	Known RBP	19.6	■□□□□ 0.73
DDX39A-209	ENST00000589318	PHLPP1	O60346	1717 aa		19.6	■□□□□ 0.73
DDX39A-209	ENST00000589318	SCN11A	Q9UI33	1791 aa		19.6	■□□□□ 0.73
DDX39A-209	ENST00000589318	C1orf141	Q5JVX7	400 aa		19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	MPRIP	Q6WCQ1	1025 aa		19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	ARHGAP45	Q92619	1136 aa		19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	RNMT	O43148	476 aa	Known RBP	19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	TAT	P17735	454 aa	Predicted RBP	19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	IL27	Q8NEV9	243 aa		19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	19.59	■□□□□ 0.73
DDX39A-209	ENST00000589318	PARP4	Q9UKK3	1724 aa	Known RBP	19.58	■□□□□ 0.73
DDX39A-209	ENST00000589318	AAMP	Q13685	434 aa		19.57	■□□□□ 0.72
DDX39A-209	ENST00000589318	TMEM57	Q8N5G2	664 aa		19.57	■□□□□ 0.72

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms