RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	PER1	O15534	1290 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN2-208	ENST00000589216	EZH2	Q15910	746 aa	Known RBP	13.55	□□□□□ -0.24
PTPN2-208	ENST00000589216	APBA3	O96018	575 aa		13.54	□□□□□ -0.24
PTPN2-208	ENST00000589216	CAMKK2	Q96RR4	588 aa		13.54	□□□□□ -0.24
PTPN2-208	ENST00000589216	KNSTRN	Q9Y448	316 aa		13.54	□□□□□ -0.24
PTPN2-208	ENST00000589216	KAT6B	Q8WYB5	2073 aa		13.53	□□□□□ -0.24
PTPN2-208	ENST00000589216	KCNQ2	O43526	872 aa		13.53	□□□□□ -0.24
PTPN2-208	ENST00000589216	EIF4A2	Q14240	407 aa	Known RBP	13.53	□□□□□ -0.24
PTPN2-208	ENST00000589216	MORC1	Q86VD1	984 aa		13.53	□□□□□ -0.24
PTPN2-208	ENST00000589216	PAPPA	Q13219	1627 aa		13.53	□□□□□ -0.24
PTPN2-208	ENST00000589216	SRCAP	Q6ZRS2	3230 aa		13.52	□□□□□ -0.24
PTPN2-208	ENST00000589216	ACSBG1	Q96GR2	724 aa		13.52	□□□□□ -0.25
PTPN2-208	ENST00000589216	PARD3	Q8TEW0	1356 aa		13.52	□□□□□ -0.25
PTPN2-208	ENST00000589216	ITGB4	P16144	1822 aa		13.51	□□□□□ -0.25
PTPN2-208	ENST00000589216	COL3A1	P02461	1466 aa	Predicted RBP	13.51	□□□□□ -0.25
PTPN2-208	ENST00000589216	PSD	A5PKW4	1024 aa	Predicted RBP	13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	CC2D1B	Q5T0F9	858 aa	Known RBP	13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	DDX54	Q8TDD1	881 aa	Known RBP	13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	EYA1	Q99502	592 aa		13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	LY75	O60449	1722 aa		13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	LRP5	O75197	1615 aa		13.5	□□□□□ -0.25
PTPN2-208	ENST00000589216	NPC1L1	Q9UHC9	1359 aa		13.49	□□□□□ -0.25
PTPN2-208	ENST00000589216	IGSF1	Q8N6C5	1336 aa		13.49	□□□□□ -0.25
PTPN2-208	ENST00000589216	CNGB1	Q14028	1251 aa	Predicted RBP	13.49	□□□□□ -0.25
PTPN2-208	ENST00000589216	RAPGEF4	Q8WZA2	1011 aa		13.49	□□□□□ -0.25
PTPN2-208	ENST00000589216	CASZ1	Q86V15	1759 aa		13.48	□□□□□ -0.25
PTPN2-208	ENST00000589216	TAT	P17735	454 aa	Predicted RBP	13.48	□□□□□ -0.25
PTPN2-208	ENST00000589216	ZCRB1	Q8TBF4	217 aa	Known RBP	13.48	□□□□□ -0.25
PTPN2-208	ENST00000589216	TUBGCP6	Q96RT7	1819 aa		13.48	□□□□□ -0.25
PTPN2-208	ENST00000589216	CYP27B1	O15528	508 aa		13.47	□□□□□ -0.25
PTPN2-208	ENST00000589216	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.47	□□□□□ -0.25
PTPN2-208	ENST00000589216	PCDH11X	Q9BZA7	1347 aa		13.46	□□□□□ -0.25
PTPN2-208	ENST00000589216	PCDH11Y	Q9BZA8	1340 aa		13.46	□□□□□ -0.25
PTPN2-208	ENST00000589216	AEBP1	Q8IUX7	1158 aa		13.46	□□□□□ -0.25
PTPN2-208	ENST00000589216	PROM2	Q8N271	834 aa		13.46	□□□□□ -0.25
PTPN2-208	ENST00000589216	R3HDM1	Q15032	1099 aa	Known RBP	13.45	□□□□□ -0.26
PTPN2-208	ENST00000589216	VIRMA	Q69YN4	1812 aa	Known RBP	13.45	□□□□□ -0.26
PTPN2-208	ENST00000589216	PLSCR1	O15162	318 aa		13.44	□□□□□ -0.26
PTPN2-208	ENST00000589216	MTHFS	P49914	203 aa		13.44	□□□□□ -0.26
PTPN2-208	ENST00000589216	KDR	P35968	1356 aa		13.44	□□□□□ -0.26
PTPN2-208	ENST00000589216	IL13	P35225	146 aa		13.43	□□□□□ -0.26
PTPN2-208	ENST00000589216	TAF1L	Q8IZX4	1826 aa		13.43	□□□□□ -0.26
PTPN2-208	ENST00000589216	C5	P01031	1676 aa		13.43	□□□□□ -0.26
PTPN2-208	ENST00000589216	PRIM1	P49642	420 aa	Known RBP	13.42	□□□□□ -0.26
PTPN2-208	ENST00000589216	TXNRD1	Q16881	649 aa		13.42	□□□□□ -0.26
PTPN2-208	ENST00000589216	SYTL4	Q96C24	671 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN2-208	ENST00000589216	KDM6A	O15550	1401 aa	Predicted RBP	13.41	□□□□□ -0.26
PTPN2-208	ENST00000589216	SCN11A	Q9UI33	1791 aa		13.41	□□□□□ -0.26
PTPN2-208	ENST00000589216	PLEKHG2	Q9H7P9	1386 aa		13.41	□□□□□ -0.26
PTPN2-208	ENST00000589216	QSER1	Q2KHR3	1735 aa		13.41	□□□□□ -0.26
PTPN2-208	ENST00000589216	PHKG2	P15735	406 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	KCNQ4	P56696	695 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	SULT6B1	Q6IMI4	303 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	LRRC4B	Q9NT99	713 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	SPG7	Q9UQ90	795 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	ADAMTS7	Q9UKP4	1686 aa		13.39	□□□□□ -0.27
PTPN2-208	ENST00000589216	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN2-208	ENST00000589216	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
PTPN2-208	ENST00000589216	HMOX1	P09601	288 aa		13.37	□□□□□ -0.27
PTPN2-208	ENST00000589216	NKX1-1	Q15270	411 aa	Predicted RBP	13.37	□□□□□ -0.27
PTPN2-208	ENST00000589216	ZNF827	Q17R98	1081 aa		13.37	□□□□□ -0.27
PTPN2-208	ENST00000589216	PALLD	Q8WX93	1383 aa		13.36	□□□□□ -0.27
PTPN2-208	ENST00000589216	PPP2R1A	P30153	589 aa		13.36	□□□□□ -0.27
PTPN2-208	ENST00000589216	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.36	□□□□□ -0.27
PTPN2-208	ENST00000589216	C4B	P0C0L5	1744 aa		13.36	□□□□□ -0.27
PTPN2-208	ENST00000589216	MRC1	P22897	1456 aa		13.36	□□□□□ -0.27
PTPN2-208	ENST00000589216	DIAPH1	O60610	1272 aa	Known RBP	13.35	□□□□□ -0.27
PTPN2-208	ENST00000589216	NBPF14	Q5TI25	921 aa		13.35	□□□□□ -0.27
PTPN2-208	ENST00000589216	MPRIP	Q6WCQ1	1025 aa		13.35	□□□□□ -0.27
PTPN2-208	ENST00000589216	COL5A3	P25940	1745 aa	Predicted RBP	13.34	□□□□□ -0.27
PTPN2-208	ENST00000589216	IFNL2	Q8IZJ0	200 aa		13.34	□□□□□ -0.27
PTPN2-208	ENST00000589216	PIGB	Q92521	554 aa		13.34	□□□□□ -0.27
PTPN2-208	ENST00000589216	UBR3	Q6ZT12	1888 aa		13.33	□□□□□ -0.27
PTPN2-208	ENST00000589216	TJP1	Q07157	1748 aa		13.33	□□□□□ -0.27
PTPN2-208	ENST00000589216	SIPA1L3	O60292	1781 aa	Predicted RBP	13.33	□□□□□ -0.28
PTPN2-208	ENST00000589216	SLC15A2	Q16348	729 aa		13.33	□□□□□ -0.28
PTPN2-208	ENST00000589216	ZNF831	Q5JPB2	1677 aa		13.33	□□□□□ -0.28
PTPN2-208	ENST00000589216	COL24A1	Q17RW2	1714 aa		13.33	□□□□□ -0.28
PTPN2-208	ENST00000589216	CIC	Q96RK0	1608 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN2-208	ENST00000589216	DDX10	Q13206	875 aa	Known RBP	13.32	□□□□□ -0.28
PTPN2-208	ENST00000589216	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN2-208	ENST00000589216	STK32B	Q9NY57	414 aa		13.32	□□□□□ -0.28
PTPN2-208	ENST00000589216	CCNL1	Q9UK58	526 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN2-208	ENST00000589216	U2SURP	O15042	1029 aa	Known RBP	13.31	□□□□□ -0.28
PTPN2-208	ENST00000589216	SLC27A3	Q5K4L6	730 aa		13.31	□□□□□ -0.28
PTPN2-208	ENST00000589216	AKT1S1	Q96B36	256 aa		13.31	□□□□□ -0.28
PTPN2-208	ENST00000589216	TMOD3	Q9NYL9	352 aa		13.31	□□□□□ -0.28
PTPN2-208	ENST00000589216	UBR2	Q8IWV8	1755 aa		13.3	□□□□□ -0.28
PTPN2-208	ENST00000589216	AMOT	Q4VCS5	1084 aa		13.3	□□□□□ -0.28
PTPN2-208	ENST00000589216	DCAF5	Q96JK2	942 aa		13.3	□□□□□ -0.28
PTPN2-208	ENST00000589216	ASAP1	Q9ULH1	1129 aa		13.3	□□□□□ -0.28
PTPN2-208	ENST00000589216	DLG5	Q8TDM6	1919 aa		13.29	□□□□□ -0.28
PTPN2-208	ENST00000589216	ZBTB7A	O95365	584 aa		13.29	□□□□□ -0.28
PTPN2-208	ENST00000589216	MTHFSD	Q2M296	383 aa	Known RBP	13.29	□□□□□ -0.28
PTPN2-208	ENST00000589216	RSPH6A	Q9H0K4	717 aa		13.29	□□□□□ -0.28
PTPN2-208	ENST00000589216	PNPLA7	Q6ZV29	1317 aa		13.29	□□□□□ -0.28
PTPN2-208	ENST00000589216	C1orf141	Q5JVX7	400 aa		13.28	□□□□□ -0.28
PTPN2-208	ENST00000589216	AMIGO3	Q86WK7	504 aa		13.28	□□□□□ -0.28
PTPN2-208	ENST00000589216	CFAP53	Q96M91	514 aa		13.28	□□□□□ -0.28

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