RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CD163L1Q9NR16 1453 aa9.4□□□□□ -0.91
ZNF540-206ENST00000589117 DEKP35659 375 aaKnown RBP9.39□□□□□ -0.91
ZNF540-206ENST00000589117 WAPLQ7Z5K2 1190 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 SKAP1Q86WV1 359 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 TMEM106CQ9BVX2 250 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 BCL2L13Q9BXK5 485 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 ANKRD26Q9UPS8 1709 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 ONECUT3O60422 494 aaPredicted RBP9.39□□□□□ -0.91
ZNF540-206ENST00000589117 EXOSC9Q06265 439 aaKnown RBP9.39□□□□□ -0.91
ZNF540-206ENST00000589117 LMOD3Q0VAK6 560 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 ALDH1L2Q3SY69 923 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 TRIM35Q9UPQ4 493 aa9.39□□□□□ -0.91
ZNF540-206ENST00000589117 EDC4Q6P2E9 1401 aaKnown RBP9.39□□□□□ -0.91
ZNF540-206ENST00000589117 ATF7IPQ6VMQ6 1270 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 BECN1Q14457 450 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 TSR2Q969E8 191 aaKnown RBP9.38□□□□□ -0.91
ZNF540-206ENST00000589117 COG3Q96JB2 828 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 POLKQ9UBT6 870 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 FAM135BQ49AJ0 1406 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 COL3A1P02461 1466 aaPredicted RBP9.38□□□□□ -0.91
ZNF540-206ENST00000589117 NLRP1Q9C000 1473 aa9.38□□□□□ -0.91
ZNF540-206ENST00000589117 TSPOAP1O95153 1857 aa9.37□□□□□ -0.91
ZNF540-206ENST00000589117 RLBP1P12271 317 aa9.37□□□□□ -0.91
ZNF540-206ENST00000589117 NUDT16Q96DE0 195 aaKnown RBP9.37□□□□□ -0.91
ZNF540-206ENST00000589117 PCDHB15Q9Y5E8 787 aa9.37□□□□□ -0.91
ZNF540-206ENST00000589117 PPIP5K1Q6PFW1 1433 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 GRXCR2A6NFK2 248 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 PRKAR2BP31323 418 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 GNAI1P63096 354 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 DPY19L2Q6NUT2 758 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 ITPRIPQ8IWB1 547 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 SSH1Q8WYL5 1049 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 NECTIN2Q92692 538 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 AATKQ6ZMQ8 1374 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 HDAC1Q13547 482 aaPredicted RBP9.36□□□□□ -0.91
ZNF540-206ENST00000589117 NFE2L2Q16236 605 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 TXNDC2Q86VQ3 553 aa9.36□□□□□ -0.91
ZNF540-206ENST00000589117 LAS1LQ9Y4W2 734 aaKnown RBP9.36□□□□□ -0.91
ZNF540-206ENST00000589117 CPSF1Q10570 1443 aaKnown RBP9.35□□□□□ -0.91
ZNF540-206ENST00000589117 KIF20BQ96Q89 1820 aa9.35□□□□□ -0.91
ZNF540-206ENST00000589117 TNRQ92752 1358 aa9.35□□□□□ -0.91
ZNF540-206ENST00000589117 TRIM27P14373 513 aa9.35□□□□□ -0.91
ZNF540-206ENST00000589117 NOB1Q9ULX3 412 aaKnown RBP9.35□□□□□ -0.91
ZNF540-206ENST00000589117 NUTM2FA1L443 756 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 IRF6O14896 467 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 CCDC82Q8N4S0 544 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 PDZRN3Q9UPQ7 1066 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 CDC42BPGQ6DT37 1551 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 IFT57Q9NWB7 429 aa9.34□□□□□ -0.91
ZNF540-206ENST00000589117 FXR2P51116 673 aaKnown RBP eCLIP9.33□□□□□ -0.92
ZNF540-206ENST00000589117 MAP2K5Q13163 448 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 ARHGAP45Q92619 1136 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 TECPR2O15040 1411 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 METP08581 1390 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 AMHR2Q16671 573 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 ZRANB1Q9UGI0 708 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 EID1Q9Y6B2 187 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 TMEM2Q9UHN6 1383 aa9.33□□□□□ -0.92
ZNF540-206ENST00000589117 CDK12Q9NYV4 1490 aaPredicted RBP9.32□□□□□ -0.92
ZNF540-206ENST00000589117 IL13P35225 146 aa9.32□□□□□ -0.92
ZNF540-206ENST00000589117 HMOX1P09601 288 aa9.32□□□□□ -0.92
ZNF540-206ENST00000589117 PRIM1P49642 420 aaKnown RBP9.32□□□□□ -0.92
ZNF540-206ENST00000589117 NME9Q86XW9 330 aa9.32□□□□□ -0.92
ZNF540-206ENST00000589117 REPIN1Q9BWE0 567 aaKnown RBP9.32□□□□□ -0.92
ZNF540-206ENST00000589117 ZBTB40Q9NUA8 1239 aa9.31□□□□□ -0.92
ZNF540-206ENST00000589117 TNNQ9UQP3 1299 aa9.31□□□□□ -0.92
ZNF540-206ENST00000589117 EMILIN1Q9Y6C2 1016 aa9.31□□□□□ -0.92
ZNF540-206ENST00000589117 EIF5BO60841 1220 aaKnown RBP9.31□□□□□ -0.92
ZNF540-206ENST00000589117 TMEM57Q8N5G2 664 aa9.31□□□□□ -0.92
ZNF540-206ENST00000589117 SETD1AO15047 1707 aaKnown RBP9.3□□□□□ -0.92
ZNF540-206ENST00000589117 SPDYE16A6NNV3 312 aaPredicted RBP9.3□□□□□ -0.92
ZNF540-206ENST00000589117 MS4A3Q96HJ5 214 aa9.3□□□□□ -0.92
ZNF540-206ENST00000589117 LRRC7Q96NW7 1537 aa9.3□□□□□ -0.92
ZNF540-206ENST00000589117 SLC4A3P48751 1232 aa9.3□□□□□ -0.92
ZNF540-206ENST00000589117 ILDR1Q86SU0 546 aaPredicted RBP9.3□□□□□ -0.92
ZNF540-206ENST00000589117 SMC5Q8IY18 1101 aa9.3□□□□□ -0.92
ZNF540-206ENST00000589117 PHACTR3Q96KR7 559 aa9.3□□□□□ -0.92
ZNF540-206ENST00000589117 KNDC1Q76NI1 1749 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 VAMP4O75379 141 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 OSBPP22059 807 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 TTLL12Q14166 644 aaPredicted RBP9.29□□□□□ -0.92
ZNF540-206ENST00000589117 NFKBIBQ15653 356 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 API5Q9BZZ5 524 aaKnown RBP9.29□□□□□ -0.92
ZNF540-206ENST00000589117 CPS1P31327 1500 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 MAP2P11137 1827 aaKnown RBP9.29□□□□□ -0.92
ZNF540-206ENST00000589117 PLEKHG1Q9ULL1 1385 aa9.29□□□□□ -0.92
ZNF540-206ENST00000589117 ZNF853P0CG23 659 aa9.28□□□□□ -0.92
ZNF540-206ENST00000589117 FBLN1P23142 703 aa9.28□□□□□ -0.92
ZNF540-206ENST00000589117 RRS1Q15050 365 aaKnown RBP9.28□□□□□ -0.92
ZNF540-206ENST00000589117 TWISTNBQ3B726 338 aaPredicted RBP9.28□□□□□ -0.92
ZNF540-206ENST00000589117 TBC1D32Q96NH3 1257 aa9.28□□□□□ -0.92
ZNF540-206ENST00000589117 BCL11AQ9H165 835 aa9.28□□□□□ -0.92
ZNF540-206ENST00000589117 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.28□□□□□ -0.92
ZNF540-206ENST00000589117 NRXN3Q9Y4C0 1643 aa9.28□□□□□ -0.92
ZNF540-206ENST00000589117 VIRMAQ69YN4 1812 aaKnown RBP9.28□□□□□ -0.92
ZNF540-206ENST00000589117 TTC21BQ7Z4L5 1316 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 GNPATO15228 680 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 FOXK1P85037 733 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 NUCB1Q02818 461 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms