RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CIZ1Q9ULV3 898 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-212ENST00000574799 LTN1O94822 1766 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 RARSP54136 660 aaKnown RBP11.81□□□□□ -0.52
CCDC40-212ENST00000574799 RIPK4P57078 832 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 BBXQ8WY36 941 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-212ENST00000574799 TMPOP42166 694 aaKnown RBP11.8□□□□□ -0.52
CCDC40-212ENST00000574799 ZKSCAN2Q63HK3 967 aa11.8□□□□□ -0.52
CCDC40-212ENST00000574799 SMAP1Q8IYB5 467 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-212ENST00000574799 USP31Q70CQ4 1352 aa11.8□□□□□ -0.52
CCDC40-212ENST00000574799 NGEFQ8N5V2 710 aa11.8□□□□□ -0.52
CCDC40-212ENST00000574799 DZIP1LQ8IYY4 767 aaKnown RBP11.79□□□□□ -0.52
CCDC40-212ENST00000574799 CCDC61Q9Y6R9 512 aa11.79□□□□□ -0.52
CCDC40-212ENST00000574799 RGPD2P0DJD1 1756 aa11.79□□□□□ -0.52
CCDC40-212ENST00000574799 LRRC37A3O60309 1634 aa11.79□□□□□ -0.52
CCDC40-212ENST00000574799 DYNC1I1O14576 645 aa11.79□□□□□ -0.52
CCDC40-212ENST00000574799 PLEKHG3A1L390 1219 aa11.79□□□□□ -0.52
CCDC40-212ENST00000574799 U2AF1L5P0DN76 240 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-212ENST00000574799 U2AF1Q01081 240 aaKnown RBP eCLIP11.79□□□□□ -0.52
CCDC40-212ENST00000574799 HDGFL2Q7Z4V5 671 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-212ENST00000574799 ACEP12821 1306 aa11.78□□□□□ -0.52
CCDC40-212ENST00000574799 SASS6Q6UVJ0 657 aa11.78□□□□□ -0.52
CCDC40-212ENST00000574799 TSR2Q969E8 191 aaKnown RBP11.78□□□□□ -0.52
CCDC40-212ENST00000574799 CCDC39Q9UFE4 941 aa11.78□□□□□ -0.52
CCDC40-212ENST00000574799 PRPF40AO75400 957 aaKnown RBP11.77□□□□□ -0.52
CCDC40-212ENST00000574799 TBX22Q9Y458 520 aa11.77□□□□□ -0.52
CCDC40-212ENST00000574799 K7ELQ4 463 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 FGD1P98174 961 aa11.77□□□□□ -0.53
CCDC40-212ENST00000574799 CHAF1AQ13111 956 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 AMOTL2Q9Y2J4 779 aa11.77□□□□□ -0.53
CCDC40-212ENST00000574799 RRS1Q15050 365 aaKnown RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 ZNF771Q7L3S4 317 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 PRDM4Q9UKN5 801 aa11.77□□□□□ -0.53
CCDC40-212ENST00000574799 PHRF1Q9P1Y6 1649 aaKnown RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 TRPM3Q9HCF6 1732 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-212ENST00000574799 ANKRD45Q5TZF3 282 aa11.76□□□□□ -0.53
CCDC40-212ENST00000574799 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
CCDC40-212ENST00000574799 KLHL40Q2TBA0 621 aa11.76□□□□□ -0.53
CCDC40-212ENST00000574799 FOXD4L6Q3SYB3 417 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-212ENST00000574799 FOXD4L3Q6VB84 417 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-212ENST00000574799 TTC21BQ7Z4L5 1316 aa11.76□□□□□ -0.53
CCDC40-212ENST00000574799 CFAP53Q96M91 514 aa11.75□□□□□ -0.53
CCDC40-212ENST00000574799 CRYBG1Q9Y4K1 1723 aa11.75□□□□□ -0.53
CCDC40-212ENST00000574799 DIAPH1O60610 1272 aaKnown RBP11.75□□□□□ -0.53
CCDC40-212ENST00000574799 BAG4O95429 457 aaKnown RBP11.75□□□□□ -0.53
CCDC40-212ENST00000574799 MVPQ14764 893 aaKnown RBP11.75□□□□□ -0.53
CCDC40-212ENST00000574799 PPP1R9BQ96SB3 815 aa11.75□□□□□ -0.53
CCDC40-212ENST00000574799 ESF1Q9H501 851 aaKnown RBP11.75□□□□□ -0.53
CCDC40-212ENST00000574799 TERF1P54274 439 aa11.75□□□□□ -0.53
CCDC40-212ENST00000574799 XIRP1Q702N8 1843 aaKnown RBP11.74□□□□□ -0.53
CCDC40-212ENST00000574799 NUCB2P80303 420 aa11.74□□□□□ -0.53
CCDC40-212ENST00000574799 ZKSCAN5Q9Y2L8 839 aa11.74□□□□□ -0.53
CCDC40-212ENST00000574799 NFAT5O94916 1531 aa11.74□□□□□ -0.53
CCDC40-212ENST00000574799 KCNA6P17658 529 aa11.74□□□□□ -0.53
CCDC40-212ENST00000574799 NOL7Q9UMY1 257 aaKnown RBP11.74□□□□□ -0.53
CCDC40-212ENST00000574799 SMC5Q8IY18 1101 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 CCDC94Q9BW85 323 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 DDX19BQ9UMR2 479 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 SETD1BQ9UPS6 1966 aaKnown RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 SYCE3A1L190 88 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 U2SURPO15042 1029 aaKnown RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 MAPK8IP2Q13387 824 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 ZSCAN23Q3MJ62 389 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 RBM42Q9BTD8 480 aaKnown RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 RBM27Q9P2N5 1060 aaKnown RBP11.73□□□□□ -0.53
CCDC40-212ENST00000574799 IGSF3O75054 1194 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 FCHSD2O94868 740 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 ZNF853P0CG23 659 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 TSC1Q92574 1164 aa11.73□□□□□ -0.53
CCDC40-212ENST00000574799 NUTM2FA1L443 756 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 SPDYE4A6NLX3 237 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 PRIM1P49642 420 aaKnown RBP11.72□□□□□ -0.53
CCDC40-212ENST00000574799 PRKAR2BP31323 418 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 PIK3R4Q99570 1358 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 FAM177BA6PVY3 158 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 HMOX1P09601 288 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 RBSNQ9H1K0 784 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 IL16Q14005 1332 aa11.72□□□□□ -0.53
CCDC40-212ENST00000574799 PPP4R3BQ5MIZ7 849 aa11.71□□□□□ -0.53
CCDC40-212ENST00000574799 ANKARQ7Z5J8 1434 aa11.71□□□□□ -0.53
CCDC40-212ENST00000574799 AEBP1Q8IUX7 1158 aa11.71□□□□□ -0.53
CCDC40-212ENST00000574799 EXOSC9Q06265 439 aaKnown RBP11.71□□□□□ -0.53
CCDC40-212ENST00000574799 THUMPD2Q9BTF0 503 aaKnown RBP11.71□□□□□ -0.53
CCDC40-212ENST00000574799 HDGFP51858 240 aaKnown RBP11.71□□□□□ -0.54
CCDC40-212ENST00000574799 EIF4A2Q14240 407 aaKnown RBP11.71□□□□□ -0.54
CCDC40-212ENST00000574799 RGPD5Q99666 1765 aa11.71□□□□□ -0.54
CCDC40-212ENST00000574799 HMGN5P82970 282 aaKnown RBP11.7□□□□□ -0.54
CCDC40-212ENST00000574799 NOL8Q76FK4 1167 aaKnown RBP11.7□□□□□ -0.54
CCDC40-212ENST00000574799 GAS2L2Q8NHY3 880 aa11.7□□□□□ -0.54
CCDC40-212ENST00000574799 SNX21Q969T3 373 aa11.7□□□□□ -0.54
CCDC40-212ENST00000574799 CAMTA1Q9Y6Y1 1673 aa11.7□□□□□ -0.54
CCDC40-212ENST00000574799 APBB1O00213 710 aa11.7□□□□□ -0.54
CCDC40-212ENST00000574799 HS1BP3Q53T59 392 aa11.7□□□□□ -0.54
CCDC40-212ENST00000574799 IPO8O15397 1037 aaKnown RBP11.7□□□□□ -0.54
CCDC40-212ENST00000574799 ZNF692Q9BU19 519 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-212ENST00000574799 CGNQ9P2M7 1197 aaKnown RBP11.7□□□□□ -0.54
CCDC40-212ENST00000574799 SSH1Q8WYL5 1049 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 SYAP1Q96A49 352 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-212ENST00000574799 N4BP2Q86UW6 1770 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-212ENST00000574799 KIF16BQ96L93 1317 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 PLPPR3Q6T4P5 718 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms