RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 MCM10Q7L590 875 aa23.56■■□□□ 1.36
SCARF1-206ENST00000573852 RPAP2Q8IXW5 612 aaPredicted RBP23.56■■□□□ 1.36
SCARF1-206ENST00000573852 ESPNB1AK53 854 aa23.56■■□□□ 1.36
SCARF1-206ENST00000573852 SDSP20132 328 aa23.56■■□□□ 1.36
SCARF1-206ENST00000573852 PPP6R1Q9UPN7 881 aa23.56■■□□□ 1.36
SCARF1-206ENST00000573852 AKAP12Q02952 1782 aa23.56■■□□□ 1.36
SCARF1-206ENST00000573852 MSH6P52701 1360 aa23.55■■□□□ 1.36
SCARF1-206ENST00000573852 PRR36Q9H6K5 1346 aa23.55■■□□□ 1.36
SCARF1-206ENST00000573852 APBB1O00213 710 aa23.55■■□□□ 1.36
SCARF1-206ENST00000573852 RTL1A6NKG5 1358 aa23.55■■□□□ 1.36
SCARF1-206ENST00000573852 GOLGA6L22H0YM25 854 aa23.55■■□□□ 1.36
SCARF1-206ENST00000573852 NAP1L5Q96NT1 182 aaPredicted RBP23.55■■□□□ 1.36
SCARF1-206ENST00000573852 MLECQ14165 292 aa23.54■■□□□ 1.36
SCARF1-206ENST00000573852 MEIS3Q99687 375 aa23.54■■□□□ 1.36
SCARF1-206ENST00000573852 NRKQ7Z2Y5 1582 aa23.54■■□□□ 1.36
SCARF1-206ENST00000573852 ITSN1Q15811 1721 aa23.53■■□□□ 1.36
SCARF1-206ENST00000573852 DDX49Q9Y6V7 483 aaKnown RBP23.53■■□□□ 1.36
SCARF1-206ENST00000573852 AGLP35573 1532 aa23.52■■□□□ 1.36
SCARF1-206ENST00000573852 KLHL40Q2TBA0 621 aa23.52■■□□□ 1.36
SCARF1-206ENST00000573852 KIAA0232Q92628 1395 aa23.51■■□□□ 1.35
SCARF1-206ENST00000573852 HAP1P54257 671 aaPredicted RBP23.51■■□□□ 1.35
SCARF1-206ENST00000573852 TRIM44Q96DX7 344 aaPredicted RBP23.51■■□□□ 1.35
SCARF1-206ENST00000573852 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.5■■□□□ 1.35
SCARF1-206ENST00000573852 PTPRCP08575 1304 aa23.5■■□□□ 1.35
SCARF1-206ENST00000573852 CYP2E1P05181 493 aaPredicted RBP23.5■■□□□ 1.35
SCARF1-206ENST00000573852 PKP1Q13835 747 aa23.5■■□□□ 1.35
SCARF1-206ENST00000573852 FAM69CQ0P6D2 419 aa23.49■■□□□ 1.35
SCARF1-206ENST00000573852 MCTP1Q6DN14 999 aa23.49■■□□□ 1.35
SCARF1-206ENST00000573852 SIRT1Q96EB6 747 aa23.49■■□□□ 1.35
SCARF1-206ENST00000573852 NUCB2P80303 420 aa23.48■■□□□ 1.35
SCARF1-206ENST00000573852 TECPR2O15040 1411 aa23.48■■□□□ 1.35
SCARF1-206ENST00000573852 SLC4A2P04920 1241 aa23.48■■□□□ 1.35
SCARF1-206ENST00000573852 TTC21BQ7Z4L5 1316 aa23.48■■□□□ 1.35
SCARF1-206ENST00000573852 HSP90AB2PQ58FF8 381 aa23.47■■□□□ 1.35
SCARF1-206ENST00000573852 MIS18AQ9NYP9 233 aa23.47■■□□□ 1.35
SCARF1-206ENST00000573852 CASC1Q6TDU7 716 aa23.47■■□□□ 1.35
SCARF1-206ENST00000573852 IBTKQ9P2D0 1353 aaPredicted RBP23.47■■□□□ 1.35
SCARF1-206ENST00000573852 CRB1P82279 1406 aa23.46■■□□□ 1.35
SCARF1-206ENST00000573852 NASPP49321 788 aaPredicted RBP23.46■■□□□ 1.35
SCARF1-206ENST00000573852 ZGPATQ8N5A5 531 aaKnown RBP23.46■■□□□ 1.35
SCARF1-206ENST00000573852 LMBRD1Q9NUN5 540 aa23.46■■□□□ 1.35
SCARF1-206ENST00000573852 TSPOAP1O95153 1857 aa23.45■■□□□ 1.34
SCARF1-206ENST00000573852 CYB5RLQ6IPT4 315 aa23.45■■□□□ 1.34
SCARF1-206ENST00000573852 G2E3Q7L622 706 aa23.45■■□□□ 1.34
SCARF1-206ENST00000573852 PEAK1Q9H792 1746 aa23.44■■□□□ 1.34
SCARF1-206ENST00000573852 ACEP12821 1306 aa23.44■■□□□ 1.34
SCARF1-206ENST00000573852 ST18O60284 1047 aa23.44■■□□□ 1.34
SCARF1-206ENST00000573852 PPP1R9BQ96SB3 815 aa23.44■■□□□ 1.34
SCARF1-206ENST00000573852 OVOS2A0A0J9YW53 1432 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 OVOS2Q6IE36 1432 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 CWC22Q9HCG8 908 aaKnown RBP23.43■■□□□ 1.34
SCARF1-206ENST00000573852 ROBO2Q9HCK4 1378 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 F6X3S4 739 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 REC8O95072 547 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 CCDC173Q0VFZ6 552 aa23.43■■□□□ 1.34
SCARF1-206ENST00000573852 NUTM2FA1L443 756 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 FOXO3O43524 673 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 SLC4A10Q6U841 1118 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 ERC2O15083 957 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 RGPD1P0DJD0 1748 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 NCLP19338 710 aaKnown RBP23.42■■□□□ 1.34
SCARF1-206ENST00000573852 CAVIN1Q6NZI2 390 aaKnown RBP23.42■■□□□ 1.34
SCARF1-206ENST00000573852 ZDHHC9Q9Y397 364 aa23.42■■□□□ 1.34
SCARF1-206ENST00000573852 SOX12O15370 315 aa23.41■■□□□ 1.34
SCARF1-206ENST00000573852 PDE1AP54750 535 aa23.41■■□□□ 1.34
SCARF1-206ENST00000573852 ZNF445P59923 1031 aa23.41■■□□□ 1.34
SCARF1-206ENST00000573852 HMMRO75330 724 aa23.4■■□□□ 1.34
SCARF1-206ENST00000573852 OSBPL3Q9H4L5 887 aa23.4■■□□□ 1.34
SCARF1-206ENST00000573852 ZSCAN23Q3MJ62 389 aa23.39■■□□□ 1.34
SCARF1-206ENST00000573852 MAP3K19Q56UN5 1328 aa23.38■■□□□ 1.33
SCARF1-206ENST00000573852 MTHFSDQ2M296 383 aaKnown RBP23.38■■□□□ 1.33
SCARF1-206ENST00000573852 TSPYL4Q9UJ04 414 aa23.38■■□□□ 1.33
SCARF1-206ENST00000573852 DIP2BQ9P265 1576 aa23.37■■□□□ 1.33
SCARF1-206ENST00000573852 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.37■■□□□ 1.33
SCARF1-206ENST00000573852 PLEKHG3A1L390 1219 aa23.37■■□□□ 1.33
SCARF1-206ENST00000573852 PRPF40AO75400 957 aaKnown RBP23.37■■□□□ 1.33
SCARF1-206ENST00000573852 CCT4P50991 539 aaKnown RBP23.37■■□□□ 1.33
SCARF1-206ENST00000573852 USP6P35125 1406 aa23.37■■□□□ 1.33
SCARF1-206ENST00000573852 HDGFP51858 240 aaKnown RBP23.36■■□□□ 1.33
SCARF1-206ENST00000573852 TSHZ3Q63HK5 1081 aa23.36■■□□□ 1.33
SCARF1-206ENST00000573852 CHAMP1Q96JM3 812 aa23.36■■□□□ 1.33
SCARF1-206ENST00000573852 EXOC6BQ9Y2D4 811 aa23.36■■□□□ 1.33
SCARF1-206ENST00000573852 NALCNQ8IZF0 1738 aa23.36■■□□□ 1.33
SCARF1-206ENST00000573852 GPT2Q8TD30 523 aa23.36■■□□□ 1.33
SCARF1-206ENST00000573852 RIMS1Q86UR5 1692 aaKnown RBP23.35■■□□□ 1.33
SCARF1-206ENST00000573852 USP31Q70CQ4 1352 aa23.35■■□□□ 1.33
SCARF1-206ENST00000573852 ANP32BQ92688 251 aaKnown RBP23.35■■□□□ 1.33
SCARF1-206ENST00000573852 TOPAZ1Q8N9V7 1692 aa23.34■■□□□ 1.33
SCARF1-206ENST00000573852 RTF1Q92541 710 aaKnown RBP23.34■■□□□ 1.33
SCARF1-206ENST00000573852 ARHGEF10O15013 1369 aa23.34■■□□□ 1.33
SCARF1-206ENST00000573852 GNAI2P04899 355 aa23.34■■□□□ 1.33
SCARF1-206ENST00000573852 SALL3Q9BXA9 1300 aa23.34■■□□□ 1.33
SCARF1-206ENST00000573852 RBSNQ9H1K0 784 aa23.34■■□□□ 1.33
SCARF1-206ENST00000573852 RBM27Q9P2N5 1060 aaKnown RBP23.34■■□□□ 1.33
SCARF1-206ENST00000573852 NEK4P51957 841 aa23.33■■□□□ 1.33
SCARF1-206ENST00000573852 ZSCAN30Q86W11 494 aa23.32■■□□□ 1.32
SCARF1-206ENST00000573852 ADAMTS13Q76LX8 1427 aa23.31■■□□□ 1.32
SCARF1-206ENST00000573852 PRIM1P49642 420 aaKnown RBP23.31■■□□□ 1.32
SCARF1-206ENST00000573852 TMX3Q96JJ7 454 aa23.31■■□□□ 1.32
SCARF1-206ENST00000573852 ESF1Q9H501 851 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms