RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 EIF4A2Q14240 407 aaKnown RBP19.29■□□□□ 0.68
NUP88-207ENST00000573584 CASC1Q6TDU7 716 aa19.29■□□□□ 0.68
NUP88-207ENST00000573584 MCM10Q7L590 875 aa19.29■□□□□ 0.68
NUP88-207ENST00000573584 ERBB4Q15303 1308 aa19.29■□□□□ 0.68
NUP88-207ENST00000573584 SMARCA5O60264 1052 aaPredicted RBP19.29■□□□□ 0.68
NUP88-207ENST00000573584 NUCB2P80303 420 aa19.28■□□□□ 0.68
NUP88-207ENST00000573584 RGS12O14924 1447 aa19.28■□□□□ 0.68
NUP88-207ENST00000573584 SETD1AO15047 1707 aaKnown RBP19.27■□□□□ 0.68
NUP88-207ENST00000573584 MEIS3Q99687 375 aa19.27■□□□□ 0.68
NUP88-207ENST00000573584 RTL1A6NKG5 1358 aa19.27■□□□□ 0.68
NUP88-207ENST00000573584 MLECQ14165 292 aa19.27■□□□□ 0.67
NUP88-207ENST00000573584 PTPRCP08575 1304 aa19.27■□□□□ 0.67
NUP88-207ENST00000573584 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.26■□□□□ 0.67
NUP88-207ENST00000573584 MSH6P52701 1360 aa19.26■□□□□ 0.67
NUP88-207ENST00000573584 MCTP1Q6DN14 999 aa19.26■□□□□ 0.67
NUP88-207ENST00000573584 NASPP49321 788 aaPredicted RBP19.25■□□□□ 0.67
NUP88-207ENST00000573584 KIAA0232Q92628 1395 aa19.25■□□□□ 0.67
NUP88-207ENST00000573584 ST18O60284 1047 aa19.25■□□□□ 0.67
NUP88-207ENST00000573584 SLC4A2P04920 1241 aa19.24■□□□□ 0.67
NUP88-207ENST00000573584 PRR36Q9H6K5 1346 aa19.24■□□□□ 0.67
NUP88-207ENST00000573584 IBTKQ9P2D0 1353 aaPredicted RBP19.24■□□□□ 0.67
NUP88-207ENST00000573584 REC8O95072 547 aa19.24■□□□□ 0.67
NUP88-207ENST00000573584 CYP2E1P05181 493 aaPredicted RBP19.24■□□□□ 0.67
NUP88-207ENST00000573584 SIRT1Q96EB6 747 aa19.24■□□□□ 0.67
NUP88-207ENST00000573584 CWC22Q9HCG8 908 aaKnown RBP19.24■□□□□ 0.67
NUP88-207ENST00000573584 SPATA31D1Q6ZQQ2 1576 aa19.23■□□□□ 0.67
NUP88-207ENST00000573584 PKP1Q13835 747 aa19.23■□□□□ 0.67
NUP88-207ENST00000573584 CCDC173Q0VFZ6 552 aa19.23■□□□□ 0.67
NUP88-207ENST00000573584 UBE2Q2Q8WVN8 375 aa19.23■□□□□ 0.67
NUP88-207ENST00000573584 ANP32BQ92688 251 aaKnown RBP19.23■□□□□ 0.67
NUP88-207ENST00000573584 NCLP19338 710 aaKnown RBP19.22■□□□□ 0.67
NUP88-207ENST00000573584 FAM69CQ0P6D2 419 aa19.22■□□□□ 0.67
NUP88-207ENST00000573584 HSP90AB2PQ58FF8 381 aa19.22■□□□□ 0.67
NUP88-207ENST00000573584 MON2Q7Z3U7 1717 aa19.22■□□□□ 0.67
NUP88-207ENST00000573584 HMMRO75330 724 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 TTC21BQ7Z4L5 1316 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 LMBRD1Q9NUN5 540 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 MIS18AQ9NYP9 233 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 NRXN3Q9Y4C0 1643 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 ERC2O15083 957 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 CAVIN1Q6NZI2 390 aaKnown RBP19.21■□□□□ 0.67
NUP88-207ENST00000573584 ZGPATQ8N5A5 531 aaKnown RBP19.21■□□□□ 0.67
NUP88-207ENST00000573584 PPP1R9BQ96SB3 815 aa19.21■□□□□ 0.67
NUP88-207ENST00000573584 C3P01024 1663 aa19.2■□□□□ 0.66
NUP88-207ENST00000573584 SLC4A10Q6U841 1118 aa19.2■□□□□ 0.66
NUP88-207ENST00000573584 AGLP35573 1532 aa19.2■□□□□ 0.66
NUP88-207ENST00000573584 HDGFP51858 240 aaKnown RBP19.19■□□□□ 0.66
NUP88-207ENST00000573584 ZNF445P59923 1031 aa19.19■□□□□ 0.66
NUP88-207ENST00000573584 AK9Q5TCS8 1911 aa19.19■□□□□ 0.66
NUP88-207ENST00000573584 CYB5RLQ6IPT4 315 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 ZSCAN23Q3MJ62 389 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 ACEP12821 1306 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 TECPR2O15040 1411 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 F6X3S4 739 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 SOX12O15370 315 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 PDE1AP54750 535 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 G2E3Q7L622 706 aa19.18■□□□□ 0.66
NUP88-207ENST00000573584 NRKQ7Z2Y5 1582 aa19.17■□□□□ 0.66
NUP88-207ENST00000573584 NUTM2FA1L443 756 aa19.17■□□□□ 0.66
NUP88-207ENST00000573584 PRPF40AO75400 957 aaKnown RBP19.17■□□□□ 0.66
NUP88-207ENST00000573584 OSBPL3Q9H4L5 887 aa19.17■□□□□ 0.66
NUP88-207ENST00000573584 CRB1P82279 1406 aa19.17■□□□□ 0.66
NUP88-207ENST00000573584 CCT4P50991 539 aaKnown RBP19.16■□□□□ 0.66
NUP88-207ENST00000573584 TSPYL4Q9UJ04 414 aa19.16■□□□□ 0.66
NUP88-207ENST00000573584 AKAP12Q02952 1782 aa19.16■□□□□ 0.66
NUP88-207ENST00000573584 RTF1Q92541 710 aaKnown RBP19.16■□□□□ 0.66
NUP88-207ENST00000573584 ZDHHC9Q9Y397 364 aa19.16■□□□□ 0.66
NUP88-207ENST00000573584 FOXO3O43524 673 aa19.15■□□□□ 0.66
NUP88-207ENST00000573584 ITSN1Q15811 1721 aa19.15■□□□□ 0.66
NUP88-207ENST00000573584 ESF1Q9H501 851 aaKnown RBP19.14■□□□□ 0.66
NUP88-207ENST00000573584 ROBO2Q9HCK4 1378 aa19.14■□□□□ 0.65
NUP88-207ENST00000573584 GNAI2P04899 355 aa19.14■□□□□ 0.65
NUP88-207ENST00000573584 NEK4P51957 841 aa19.14■□□□□ 0.65
NUP88-207ENST00000573584 MTHFSDQ2M296 383 aaKnown RBP19.14■□□□□ 0.65
NUP88-207ENST00000573584 ZSCAN30Q86W11 494 aa19.14■□□□□ 0.65
NUP88-207ENST00000573584 EXOC6BQ9Y2D4 811 aa19.14■□□□□ 0.65
NUP88-207ENST00000573584 OVOS2A0A0J9YW53 1432 aa19.13■□□□□ 0.65
NUP88-207ENST00000573584 OVOS2Q6IE36 1432 aa19.13■□□□□ 0.65
NUP88-207ENST00000573584 PLEKHG3A1L390 1219 aa19.13■□□□□ 0.65
NUP88-207ENST00000573584 MAP3K19Q56UN5 1328 aa19.13■□□□□ 0.65
NUP88-207ENST00000573584 TSHZ3Q63HK5 1081 aa19.12■□□□□ 0.65
NUP88-207ENST00000573584 GPT2Q8TD30 523 aa19.12■□□□□ 0.65
NUP88-207ENST00000573584 RBSNQ9H1K0 784 aa19.11■□□□□ 0.65
NUP88-207ENST00000573584 PRIM1P49642 420 aaKnown RBP19.11■□□□□ 0.65
NUP88-207ENST00000573584 TMX3Q96JJ7 454 aa19.11■□□□□ 0.65
NUP88-207ENST00000573584 STK31Q9BXU1 1019 aa19.11■□□□□ 0.65
NUP88-207ENST00000573584 RBM27Q9P2N5 1060 aaKnown RBP19.11■□□□□ 0.65
NUP88-207ENST00000573584 CHAMP1Q96JM3 812 aa19.1■□□□□ 0.65
NUP88-207ENST00000573584 LRRCC1Q9C099 1032 aa19.1■□□□□ 0.65
NUP88-207ENST00000573584 USP6P35125 1406 aa19.1■□□□□ 0.65
NUP88-207ENST00000573584 USP31Q70CQ4 1352 aa19.09■□□□□ 0.65
NUP88-207ENST00000573584 MSNP26038 577 aaKnown RBP19.09■□□□□ 0.65
NUP88-207ENST00000573584 FOXD4L5Q5VV16 416 aaPredicted RBP19.09■□□□□ 0.65
NUP88-207ENST00000573584 FOXD4L4Q8WXT5 416 aaPredicted RBP19.09■□□□□ 0.65
NUP88-207ENST00000573584 ESYT1Q9BSJ8 1104 aa19.09■□□□□ 0.65
NUP88-207ENST00000573584 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
NUP88-207ENST00000573584 MCM2P49736 904 aa19.09■□□□□ 0.65
NUP88-207ENST00000573584 MX1P20591 662 aa19.08■□□□□ 0.65
NUP88-207ENST00000573584 HSP90AA2PQ14568 343 aaPredicted RBP19.08■□□□□ 0.65
NUP88-207ENST00000573584 PEAK1Q9H792 1746 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms