RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 ANKRD36BQ8N2N9 1353 aa18.93■□□□□ 0.62
CCDC40-208ENST00000572270 ANKRD24Q8TF21 1146 aa18.93■□□□□ 0.62
CCDC40-208ENST00000572270 IGSF1Q8N6C5 1336 aa18.93■□□□□ 0.62
CCDC40-208ENST00000572270 PRIM1P49642 420 aaKnown RBP18.92■□□□□ 0.62
CCDC40-208ENST00000572270 WWC3Q9ULE0 1092 aa18.92■□□□□ 0.62
CCDC40-208ENST00000572270 NBPF1Q3BBV0 1214 aa18.91■□□□□ 0.62
CCDC40-208ENST00000572270 EVC2Q86UK5 1308 aa18.91■□□□□ 0.62
CCDC40-208ENST00000572270 FLAD1Q8NFF5 587 aa18.9■□□□□ 0.62
CCDC40-208ENST00000572270 KLRG1Q96E93 195 aa18.9■□□□□ 0.62
CCDC40-208ENST00000572270 USP47Q96K76 1375 aa18.9■□□□□ 0.62
CCDC40-208ENST00000572270 RAB3GAP2Q9H2M9 1393 aa18.9■□□□□ 0.62
CCDC40-208ENST00000572270 C5P01031 1676 aa18.89■□□□□ 0.61
CCDC40-208ENST00000572270 HMGB2P26583 209 aaKnown RBP18.89■□□□□ 0.61
CCDC40-208ENST00000572270 NSD2O96028 1365 aa18.89■□□□□ 0.61
CCDC40-208ENST00000572270 KTN1Q86UP2 1357 aaKnown RBP18.89■□□□□ 0.61
CCDC40-208ENST00000572270 CICQ96RK0 1608 aaPredicted RBP18.88■□□□□ 0.61
CCDC40-208ENST00000572270 FAM208AQ9UK61 1670 aaKnown RBP18.88■□□□□ 0.61
CCDC40-208ENST00000572270 USP54Q70EL1 1684 aa18.87■□□□□ 0.61
CCDC40-208ENST00000572270 JMYQ8N9B5 988 aa18.87■□□□□ 0.61
CCDC40-208ENST00000572270 MON2Q7Z3U7 1717 aa18.86■□□□□ 0.61
CCDC40-208ENST00000572270 C16orf71Q8IYS4 520 aaPredicted RBP18.85■□□□□ 0.61
CCDC40-208ENST00000572270 RBM46Q8TBY0 533 aaKnown RBP18.84■□□□□ 0.61
CCDC40-208ENST00000572270 USP31Q70CQ4 1352 aa18.83■□□□□ 0.61
CCDC40-208ENST00000572270 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.83■□□□□ 0.6
CCDC40-208ENST00000572270 TAF1LQ8IZX4 1826 aa18.82■□□□□ 0.6
CCDC40-208ENST00000572270 HTRA3P83110 453 aa18.82■□□□□ 0.6
CCDC40-208ENST00000572270 NMRK2Q9NPI5 230 aa18.82■□□□□ 0.6
CCDC40-208ENST00000572270 PCNTO95613 3336 aa18.8■□□□□ 0.6
CCDC40-208ENST00000572270 FSTL1Q12841 308 aa18.79■□□□□ 0.6
CCDC40-208ENST00000572270 ZCRB1Q8TBF4 217 aaKnown RBP18.79■□□□□ 0.6
CCDC40-208ENST00000572270 LTV1Q96GA3 475 aaPredicted RBP18.79■□□□□ 0.6
CCDC40-208ENST00000572270 AK7Q96M32 723 aa18.79■□□□□ 0.6
CCDC40-208ENST00000572270 NSD3Q9BZ95 1437 aa18.79■□□□□ 0.6
CCDC40-208ENST00000572270 C4BP0C0L5 1744 aa18.79■□□□□ 0.6
CCDC40-208ENST00000572270 NME9Q86XW9 330 aa18.78■□□□□ 0.6
CCDC40-208ENST00000572270 PHF14O94880 888 aa18.76■□□□□ 0.59
CCDC40-208ENST00000572270 IP6K1Q92551 441 aa18.76■□□□□ 0.59
CCDC40-208ENST00000572270 PALLDQ8WX93 1383 aa18.76■□□□□ 0.59
CCDC40-208ENST00000572270 UBR3Q6ZT12 1888 aa18.75■□□□□ 0.59
CCDC40-208ENST00000572270 TOGARAM1Q9Y4F4 1720 aa18.75■□□□□ 0.59
CCDC40-208ENST00000572270 SLC34A2O95436 690 aa18.75■□□□□ 0.59
CCDC40-208ENST00000572270 BCS1LQ9Y276 419 aa18.75■□□□□ 0.59
CCDC40-208ENST00000572270 PLEKHG2Q9H7P9 1386 aa18.74■□□□□ 0.59
CCDC40-208ENST00000572270 ARHGAP27Q6ZUM4 889 aa18.74■□□□□ 0.59
CCDC40-208ENST00000572270 MEGF6O75095 1541 aa18.74■□□□□ 0.59
CCDC40-208ENST00000572270 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.73■□□□□ 0.59
CCDC40-208ENST00000572270 N4BP2Q86UW6 1770 aaPredicted RBP18.73■□□□□ 0.59
CCDC40-208ENST00000572270 PXDNLA1KZ92 1463 aa18.72■□□□□ 0.59
CCDC40-208ENST00000572270 HSPA1AP0DMV8 641 aaKnown RBP18.72■□□□□ 0.59
CCDC40-208ENST00000572270 HSPA1BP0DMV9 641 aaKnown RBP18.72■□□□□ 0.59
CCDC40-208ENST00000572270 SBNO2Q9Y2G9 1366 aa18.71■□□□□ 0.59
CCDC40-208ENST00000572270 RGPD2P0DJD1 1756 aa18.71■□□□□ 0.59
CCDC40-208ENST00000572270 KIF13BQ9NQT8 1826 aa18.71■□□□□ 0.59
CCDC40-208ENST00000572270 KDM2BQ8NHM5 1336 aa18.71■□□□□ 0.59
CCDC40-208ENST00000572270 SSFA2P28290 1259 aa18.7■□□□□ 0.58
CCDC40-208ENST00000572270 PKD1L3Q7Z443 1732 aa18.7■□□□□ 0.58
CCDC40-208ENST00000572270 HDGFL2Q7Z4V5 671 aaPredicted RBP18.7■□□□□ 0.58
CCDC40-208ENST00000572270 KIAA1551Q9HCM1 1747 aa18.69■□□□□ 0.58
CCDC40-208ENST00000572270 EDC4Q6P2E9 1401 aaKnown RBP18.69■□□□□ 0.58
CCDC40-208ENST00000572270 TGFB2P61812 414 aa18.69■□□□□ 0.58
CCDC40-208ENST00000572270 AMIGO3Q86WK7 504 aa18.69■□□□□ 0.58
CCDC40-208ENST00000572270 SMARCC1Q92922 1105 aaPredicted RBP18.69■□□□□ 0.58
CCDC40-208ENST00000572270 TNRC6CQ9HCJ0 1690 aaKnown RBP18.69■□□□□ 0.58
CCDC40-208ENST00000572270 CGNL1Q0VF96 1302 aa18.69■□□□□ 0.58
CCDC40-208ENST00000572270 C9orf131Q5VYM1 1079 aa18.68■□□□□ 0.58
CCDC40-208ENST00000572270 MPRIPQ6WCQ1 1025 aa18.68■□□□□ 0.58
CCDC40-208ENST00000572270 KCPQ6ZWJ8 1503 aa18.68■□□□□ 0.58
CCDC40-208ENST00000572270 C10orf71Q711Q0 1435 aa18.67■□□□□ 0.58
CCDC40-208ENST00000572270 SMIM5Q71RC9 77 aa18.67■□□□□ 0.58
CCDC40-208ENST00000572270 SMC1BQ8NDV3 1235 aa18.67■□□□□ 0.58
CCDC40-208ENST00000572270 CD163L1Q9NR16 1453 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 FCHSD2O94868 740 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 MMP10P09238 476 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 HOXC9P31274 260 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 AMPHP49418 695 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 TMC1Q8TDI8 760 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 RAPGEF4Q8WZA2 1011 aa18.66■□□□□ 0.58
CCDC40-208ENST00000572270 A0A0G2JLW4 131 aa18.65■□□□□ 0.58
CCDC40-208ENST00000572270 PCDH11XQ9BZA7 1347 aa18.65■□□□□ 0.58
CCDC40-208ENST00000572270 PCDH11YQ9BZA8 1340 aa18.65■□□□□ 0.58
CCDC40-208ENST00000572270 RRAGCQ9HB90 399 aa18.64■□□□□ 0.57
CCDC40-208ENST00000572270 ITGB4P16144 1822 aa18.64■□□□□ 0.57
CCDC40-208ENST00000572270 ARFGEF1Q9Y6D6 1849 aa18.63■□□□□ 0.57
CCDC40-208ENST00000572270 BRCA1P38398 1863 aaKnown RBP18.63■□□□□ 0.57
CCDC40-208ENST00000572270 TATP17735 454 aaPredicted RBP18.63■□□□□ 0.57
CCDC40-208ENST00000572270 GNPATO15228 680 aa18.62■□□□□ 0.57
CCDC40-208ENST00000572270 MAP3K19Q56UN5 1328 aa18.62■□□□□ 0.57
CCDC40-208ENST00000572270 ROCK2O75116 1388 aaKnown RBP18.62■□□□□ 0.57
CCDC40-208ENST00000572270 SMG6Q86US8 1419 aaKnown RBP18.61■□□□□ 0.57
CCDC40-208ENST00000572270 CCDC87Q9NVE4 849 aa18.61■□□□□ 0.57
CCDC40-208ENST00000572270 TERF2IPQ9NYB0 399 aa18.61■□□□□ 0.57
CCDC40-208ENST00000572270 RNF181Q9P0P0 153 aa18.61■□□□□ 0.57
CCDC40-208ENST00000572270 DPEP1P16444 411 aa18.6■□□□□ 0.57
CCDC40-208ENST00000572270 USHBP1Q8N6Y0 703 aa18.6■□□□□ 0.57
CCDC40-208ENST00000572270 LINC00116Q8NCU8 138 aa18.6■□□□□ 0.57
CCDC40-208ENST00000572270 NBPF6Q5VWK0 638 aa18.59■□□□□ 0.57
CCDC40-208ENST00000572270 COG3Q96JB2 828 aa18.59■□□□□ 0.57
CCDC40-208ENST00000572270 NBPF4Q96M43 638 aa18.59■□□□□ 0.57
CCDC40-208ENST00000572270 MAP2P11137 1827 aaKnown RBP18.58■□□□□ 0.57
CCDC40-208ENST00000572270 A0A1W2PP64 1363 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms