RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 F6X3S4 739 aa10.94□□□□□ -0.66
LINC00558-201ENST00000569422 MTHFSDQ2M296 383 aaKnown RBP10.94□□□□□ -0.66
LINC00558-201ENST00000569422 TSPYL4Q9UJ04 414 aa10.94□□□□□ -0.66
LINC00558-201ENST00000569422 BRPF3Q9ULD4 1205 aa10.94□□□□□ -0.66
LINC00558-201ENST00000569422 SIRT1Q96EB6 747 aa10.94□□□□□ -0.66
LINC00558-201ENST00000569422 KIF20BQ96Q89 1820 aa10.94□□□□□ -0.66
LINC00558-201ENST00000569422 USHBP1Q8N6Y0 703 aa10.93□□□□□ -0.66
LINC00558-201ENST00000569422 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
LINC00558-201ENST00000569422 NRXN3Q9Y4C0 1643 aa10.93□□□□□ -0.66
LINC00558-201ENST00000569422 PLEKHG3A1L390 1219 aa10.93□□□□□ -0.66
LINC00558-201ENST00000569422 SMARCA5O60264 1052 aaPredicted RBP10.93□□□□□ -0.66
LINC00558-201ENST00000569422 ARHGAP45Q92619 1136 aa10.93□□□□□ -0.66
LINC00558-201ENST00000569422 KCNA6P17658 529 aa10.93□□□□□ -0.66
LINC00558-201ENST00000569422 GZF1Q9H116 711 aaPredicted RBP10.93□□□□□ -0.66
LINC00558-201ENST00000569422 HSCBQ8IWL3 235 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 ABTB2Q8N961 1025 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 PTPRUQ92729 1446 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 GCC1Q96CN9 775 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 EYA1Q99502 592 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 G2E3Q7L622 706 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 MEIS3Q99687 375 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 CHMP4BQ9H444 224 aaKnown RBP10.92□□□□□ -0.66
LINC00558-201ENST00000569422 ABCC4O15439 1325 aa10.92□□□□□ -0.66
LINC00558-201ENST00000569422 CHL1O00533 1208 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 ANKRD26Q9UPS8 1709 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 CDC42BPGQ6DT37 1551 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 USP6P35125 1406 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 HSP90AA1P07900 732 aaKnown RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 OTUD7AQ8TE49 926 aaPredicted RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 RBM42Q9BTD8 480 aaKnown RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 REREQ9P2R6 1566 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 BRPF1P55201 1214 aaPredicted RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 LMOD2Q6P5Q4 547 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 THEMISQ8N1K5 641 aaPredicted RBP10.91□□□□□ -0.66
LINC00558-201ENST00000569422 ZMYND15Q9H091 742 aa10.91□□□□□ -0.66
LINC00558-201ENST00000569422 PLEKHG1Q9ULL1 1385 aa10.9□□□□□ -0.66
LINC00558-201ENST00000569422 TBC1D9Q6ZT07 1266 aa10.9□□□□□ -0.66
LINC00558-201ENST00000569422 ANTXR1Q9H6X2 564 aa10.9□□□□□ -0.66
LINC00558-201ENST00000569422 HSP90AB1P08238 724 aaKnown RBP10.89□□□□□ -0.67
LINC00558-201ENST00000569422 TECPR2O15040 1411 aa10.89□□□□□ -0.67
LINC00558-201ENST00000569422 XPCQ01831 940 aaPredicted RBP10.89□□□□□ -0.67
LINC00558-201ENST00000569422 SETD1AO15047 1707 aaKnown RBP10.89□□□□□ -0.67
LINC00558-201ENST00000569422 BMP2KLQ5H9B9 411 aa10.89□□□□□ -0.67
LINC00558-201ENST00000569422 TBX22Q9Y458 520 aa10.88□□□□□ -0.67
LINC00558-201ENST00000569422 PTCH1Q13635 1447 aa10.88□□□□□ -0.67
LINC00558-201ENST00000569422 TSHZ3Q63HK5 1081 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 CCDC9Q9Y3X0 531 aaKnown RBP10.87□□□□□ -0.67
LINC00558-201ENST00000569422 MSH6P52701 1360 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 GSPT1P15170 499 aaKnown RBP10.87□□□□□ -0.67
LINC00558-201ENST00000569422 FKBP5Q13451 457 aaPredicted RBP10.87□□□□□ -0.67
LINC00558-201ENST00000569422 PIK3R4Q99570 1358 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 OVOS2A0A0J9YW53 1432 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 OVOS2Q6IE36 1432 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 CEP85Q6P2H3 762 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 PLEKHM2Q8IWE5 1019 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 STK31Q9BXU1 1019 aa10.87□□□□□ -0.67
LINC00558-201ENST00000569422 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.86□□□□□ -0.67
LINC00558-201ENST00000569422 CD2BP2O95400 341 aaKnown RBP10.86□□□□□ -0.67
LINC00558-201ENST00000569422 INTS3Q68E01 1043 aaKnown RBP10.86□□□□□ -0.67
LINC00558-201ENST00000569422 EIF2S2P20042 333 aaKnown RBP10.86□□□□□ -0.67
LINC00558-201ENST00000569422 EXOC6BQ9Y2D4 811 aa10.86□□□□□ -0.67
LINC00558-201ENST00000569422 FLT4P35916 1363 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 ESCO1Q5FWF5 840 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 DCTPP1Q9H773 170 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 TTC21AQ8NDW8 1320 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 HOXC9P31274 260 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 ANKRD44Q8N8A2 993 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 GAS2L2Q8NHY3 880 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 CHMP5Q9NZZ3 219 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 CDC45O75419 566 aa10.85□□□□□ -0.67
LINC00558-201ENST00000569422 GNAT3A8MTJ3 354 aa10.84□□□□□ -0.67
LINC00558-201ENST00000569422 MCM4P33991 863 aa10.84□□□□□ -0.67
LINC00558-201ENST00000569422 PSME1Q06323 249 aa10.84□□□□□ -0.67
LINC00558-201ENST00000569422 SBNO1A3KN83 1393 aa10.84□□□□□ -0.67
LINC00558-201ENST00000569422 KIF13AQ9H1H9 1805 aa10.83□□□□□ -0.67
LINC00558-201ENST00000569422 RBM25P49756 843 aaKnown RBP10.83□□□□□ -0.68
LINC00558-201ENST00000569422 IL17REQ8NFR9 667 aa10.83□□□□□ -0.68
LINC00558-201ENST00000569422 UBR1Q8IWV7 1749 aa10.83□□□□□ -0.68
LINC00558-201ENST00000569422 RPAP2Q8IXW5 612 aaPredicted RBP10.83□□□□□ -0.68
LINC00558-201ENST00000569422 USP31Q70CQ4 1352 aa10.83□□□□□ -0.68
LINC00558-201ENST00000569422 PHF8Q9UPP1 1060 aa10.83□□□□□ -0.68
LINC00558-201ENST00000569422 CRB1P82279 1406 aa10.83□□□□□ -0.68
LINC00558-201ENST00000569422 RTL1A6NKG5 1358 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 PTPRCP08575 1304 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 ANXA1P04083 346 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 SDSP20132 328 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 FLIIQ13045 1269 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 TTC22Q5TAA0 569 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 LRRC59Q96AG4 307 aaKnown RBP10.82□□□□□ -0.68
LINC00558-201ENST00000569422 KIF2CQ99661 725 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 C3P01024 1663 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 IGSF1Q8N6C5 1336 aa10.82□□□□□ -0.68
LINC00558-201ENST00000569422 PHAXQ9H814 394 aaKnown RBP10.81□□□□□ -0.68
LINC00558-201ENST00000569422 MON2Q7Z3U7 1717 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 ARHGEF10O15013 1369 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 ITSN1Q15811 1721 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 HMMRO75330 724 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 GLIPR1L2Q4G1C9 344 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 HDGFL1Q5TGJ6 251 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms