RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	COL24A1	Q17RW2	1714 aa		11.66	□□□□□ -0.54
TSC2-223	ENST00000568566	TMF1	P82094	1093 aa		11.65	□□□□□ -0.54
TSC2-223	ENST00000568566	NLGN2	Q8NFZ4	835 aa		11.65	□□□□□ -0.54
TSC2-223	ENST00000568566	DDX54	Q8TDD1	881 aa	Known RBP	11.65	□□□□□ -0.54
TSC2-223	ENST00000568566	TFCP2L1	Q9NZI6	479 aa		11.65	□□□□□ -0.54
TSC2-223	ENST00000568566	DOT1L	Q8TEK3	1739 aa		11.65	□□□□□ -0.54
TSC2-223	ENST00000568566	SLC27A3	Q5K4L6	730 aa		11.64	□□□□□ -0.55
TSC2-223	ENST00000568566	SYTL4	Q96C24	671 aa	Predicted RBP	11.64	□□□□□ -0.55
TSC2-223	ENST00000568566	CARD14	Q9BXL6	1004 aa		11.64	□□□□□ -0.55
TSC2-223	ENST00000568566	KIF7	Q2M1P5	1343 aa		11.63	□□□□□ -0.55
TSC2-223	ENST00000568566	FAM208A	Q9UK61	1670 aa	Known RBP	11.63	□□□□□ -0.55
TSC2-223	ENST00000568566	SLC16A10	Q8TF71	515 aa		11.63	□□□□□ -0.55
TSC2-223	ENST00000568566	LTV1	Q96GA3	475 aa	Predicted RBP	11.63	□□□□□ -0.55
TSC2-223	ENST00000568566	WASHC2A	Q641Q2	1341 aa		11.62	□□□□□ -0.55
TSC2-223	ENST00000568566	EDC4	Q6P2E9	1401 aa	Known RBP	11.62	□□□□□ -0.55
TSC2-223	ENST00000568566	YBX3	P16989	372 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
TSC2-223	ENST00000568566	LY75	O60449	1722 aa		11.62	□□□□□ -0.55
TSC2-223	ENST00000568566	FBLN1	P23142	703 aa		11.61	□□□□□ -0.55
TSC2-223	ENST00000568566	PRIM1	P49642	420 aa	Known RBP	11.61	□□□□□ -0.55
TSC2-223	ENST00000568566	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.61	□□□□□ -0.55
TSC2-223	ENST00000568566		A0A1W2PP64	1363 aa		11.61	□□□□□ -0.55
TSC2-223	ENST00000568566	NSD2	O96028	1365 aa		11.61	□□□□□ -0.55
TSC2-223	ENST00000568566	ANKRD36B	Q8N2N9	1353 aa		11.61	□□□□□ -0.55
TSC2-223	ENST00000568566	MSH5	O43196	834 aa		11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	IFFO2	Q5TF58	517 aa		11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	MSL1	Q68DK7	614 aa		11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	PUS7	Q96PZ0	661 aa	Known RBP	11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	CCNL1	Q9UK58	526 aa	Predicted RBP	11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	MEGF6	O75095	1541 aa		11.6	□□□□□ -0.55
TSC2-223	ENST00000568566	RGPD2	P0DJD1	1756 aa		11.59	□□□□□ -0.55
TSC2-223	ENST00000568566	ZEB1	P37275	1124 aa	Predicted RBP	11.59	□□□□□ -0.55
TSC2-223	ENST00000568566	IP6K1	Q92551	441 aa		11.59	□□□□□ -0.55
TSC2-223	ENST00000568566	ATP10D	Q9P241	1426 aa		11.59	□□□□□ -0.55
TSC2-223	ENST00000568566	PANK3	Q9H999	370 aa		11.58	□□□□□ -0.56
TSC2-223	ENST00000568566	GRIN3B	O60391	1043 aa		11.57	□□□□□ -0.56
TSC2-223	ENST00000568566	COL23A1	Q86Y22	540 aa	Predicted RBP	11.57	□□□□□ -0.56
TSC2-223	ENST00000568566	TERF2IP	Q9NYB0	399 aa		11.57	□□□□□ -0.56
TSC2-223	ENST00000568566	MAP3K19	Q56UN5	1328 aa		11.57	□□□□□ -0.56
TSC2-223	ENST00000568566	C5	P01031	1676 aa		11.56	□□□□□ -0.56
TSC2-223	ENST00000568566	HOXC9	P31274	260 aa		11.56	□□□□□ -0.56
TSC2-223	ENST00000568566	ZCRB1	Q8TBF4	217 aa	Known RBP	11.56	□□□□□ -0.56
TSC2-223	ENST00000568566	AMPH	P49418	695 aa		11.55	□□□□□ -0.56
TSC2-223	ENST00000568566	GGNBP2	Q9H3C7	697 aa		11.55	□□□□□ -0.56
TSC2-223	ENST00000568566	FYB1	O15117	783 aa		11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	CNGB1	Q14028	1251 aa	Predicted RBP	11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	CDCA8	Q53HL2	280 aa		11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	USHBP1	Q8N6Y0	703 aa		11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	ZNF526	Q8TF50	670 aa	Predicted RBP	11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	COG3	Q96JB2	828 aa		11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.54	□□□□□ -0.56
TSC2-223	ENST00000568566	ADCY9	O60503	1353 aa		11.53	□□□□□ -0.56
TSC2-223	ENST00000568566	NSD3	Q9BZ95	1437 aa		11.52	□□□□□ -0.56
TSC2-223	ENST00000568566	TAF1L	Q8IZX4	1826 aa		11.52	□□□□□ -0.57
TSC2-223	ENST00000568566	WWC3	Q9ULE0	1092 aa		11.52	□□□□□ -0.57
TSC2-223	ENST00000568566	RTL1	A6NKG5	1358 aa		11.52	□□□□□ -0.57
TSC2-223	ENST00000568566	PALLD	Q8WX93	1383 aa		11.52	□□□□□ -0.57
TSC2-223	ENST00000568566	PER1	O15534	1290 aa	Predicted RBP	11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	SLC24A1	O60721	1099 aa		11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	RRS1	Q15050	365 aa	Known RBP	11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	NBPF6	Q5VWK0	638 aa		11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	NBPF4	Q96M43	638 aa		11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	CD2AP	Q9Y5K6	639 aa		11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	TOGARAM1	Q9Y4F4	1720 aa		11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	SMG6	Q86US8	1419 aa	Known RBP	11.51	□□□□□ -0.57
TSC2-223	ENST00000568566	C4B	P0C0L5	1744 aa		11.5	□□□□□ -0.57
TSC2-223	ENST00000568566	DDX10	Q13206	875 aa	Known RBP	11.5	□□□□□ -0.57
TSC2-223	ENST00000568566	RAPGEF4	Q8WZA2	1011 aa		11.5	□□□□□ -0.57
TSC2-223	ENST00000568566	PHF14	O94880	888 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	HSPA6	P17066	643 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	SMIM5	Q71RC9	77 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	AMIGO3	Q86WK7	504 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	CGNL1	Q0VF96	1302 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	PCDH11X	Q9BZA7	1347 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	PCDH11Y	Q9BZA8	1340 aa		11.49	□□□□□ -0.57
TSC2-223	ENST00000568566	TAT	P17735	454 aa	Predicted RBP	11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	TNNT2	P45379	298 aa	Predicted RBP	11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	MPRIP	Q6WCQ1	1025 aa		11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	FLAD1	Q8NFF5	587 aa		11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	AK7	Q96M32	723 aa		11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	IGSF1	Q8N6C5	1336 aa		11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	UBR3	Q6ZT12	1888 aa		11.48	□□□□□ -0.57
TSC2-223	ENST00000568566	ITGB4	P16144	1822 aa		11.47	□□□□□ -0.57
TSC2-223	ENST00000568566	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.47	□□□□□ -0.57
TSC2-223	ENST00000568566	CC2D1B	Q5T0F9	858 aa	Known RBP	11.47	□□□□□ -0.57
TSC2-223	ENST00000568566	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.46	□□□□□ -0.57
TSC2-223	ENST00000568566	CYP27B1	O15528	508 aa		11.46	□□□□□ -0.57
TSC2-223	ENST00000568566	KIF20B	Q96Q89	1820 aa		11.46	□□□□□ -0.58
TSC2-223	ENST00000568566	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.45	□□□□□ -0.58
TSC2-223	ENST00000568566	HSP90AB2P	Q58FF8	381 aa		11.45	□□□□□ -0.58
TSC2-223	ENST00000568566	PKD1L3	Q7Z443	1732 aa		11.45	□□□□□ -0.58
TSC2-223	ENST00000568566	INSR	P06213	1382 aa		11.44	□□□□□ -0.58
TSC2-223	ENST00000568566	FLT4	P35916	1363 aa		11.44	□□□□□ -0.58
TSC2-223	ENST00000568566	SMARCC1	Q92922	1105 aa	Predicted RBP	11.44	□□□□□ -0.58
TSC2-223	ENST00000568566	EMILIN1	Q9Y6C2	1016 aa		11.44	□□□□□ -0.58
TSC2-223	ENST00000568566	CIC	Q96RK0	1608 aa	Predicted RBP	11.44	□□□□□ -0.58
TSC2-223	ENST00000568566	KIF3C	O14782	793 aa		11.43	□□□□□ -0.58
TSC2-223	ENST00000568566	HMGB2	P26583	209 aa	Known RBP	11.43	□□□□□ -0.58
TSC2-223	ENST00000568566	LINC00116	Q8NCU8	138 aa		11.43	□□□□□ -0.58
TSC2-223	ENST00000568566	PIGB	Q92521	554 aa		11.43	□□□□□ -0.58
TSC2-223	ENST00000568566	KNSTRN	Q9Y448	316 aa		11.43	□□□□□ -0.58

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