RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 RPAP2Q8IXW5 612 aaPredicted RBP7.84□□□□□ -1.15
CLN3-223ENST00000566472 RTF1Q92541 710 aaKnown RBP7.84□□□□□ -1.15
CLN3-223ENST00000566472 NWD1Q149M9 1564 aa7.84□□□□□ -1.15
CLN3-223ENST00000566472 MARF1Q9Y4F3 1742 aaKnown RBP7.83□□□□□ -1.16
CLN3-223ENST00000566472 PHRF1Q9P1Y6 1649 aaKnown RBP7.83□□□□□ -1.16
CLN3-223ENST00000566472 RBM25P49756 843 aaKnown RBP7.83□□□□□ -1.16
CLN3-223ENST00000566472 DCTN1Q14203 1278 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 ANKLE2Q86XL3 938 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 EYA1Q99502 592 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 C22orf23Q9BZE7 217 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 ATP10DQ9P241 1426 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 ADAMTSL3P82987 1691 aa7.83□□□□□ -1.16
CLN3-223ENST00000566472 PXDNLA1KZ92 1463 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 NUTM2FA1L443 756 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 HOXC9P31274 260 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 SLC4A3P48751 1232 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 CCT4P50991 539 aaKnown RBP7.82□□□□□ -1.16
CLN3-223ENST00000566472 NLRP6P59044 892 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 MTHFSDQ2M296 383 aaKnown RBP7.82□□□□□ -1.16
CLN3-223ENST00000566472 ANKRD44Q8N8A2 993 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 DCTPP1Q9H773 170 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 CHD2O14647 1828 aaKnown RBP7.82□□□□□ -1.16
CLN3-223ENST00000566472 NFAT5O94916 1531 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 MAP3K5Q99683 1374 aa7.82□□□□□ -1.16
CLN3-223ENST00000566472 LMTK3Q96Q04 1460 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 ELL2O00472 640 aaPredicted RBP7.81□□□□□ -1.16
CLN3-223ENST00000566472 ANKRD45Q5TZF3 282 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 MCM10Q7L590 875 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 SIRT2Q8IXJ6 389 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 SNX21Q969T3 373 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 CHMP4AQ9BY43 222 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 TBC1D2Q9BYX2 928 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 LNPKQ9C0E8 428 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 TSPYL4Q9UJ04 414 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 PHF8Q9UPP1 1060 aa7.81□□□□□ -1.16
CLN3-223ENST00000566472 MED1Q15648 1581 aaPredicted RBP7.8□□□□□ -1.16
CLN3-223ENST00000566472 NPHP4O75161 1426 aaPredicted RBP7.8□□□□□ -1.16
CLN3-223ENST00000566472 NCAPD2Q15021 1401 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 SLIT3O75094 1523 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 GNAT3A8MTJ3 354 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 HMMRO75330 724 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 CDC45O75419 566 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 MFAP1P55081 439 aaKnown RBP7.8□□□□□ -1.16
CLN3-223ENST00000566472 KCNH5Q8NCM2 988 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 ANTXR1Q9H6X2 564 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 MSH6P52701 1360 aa7.8□□□□□ -1.16
CLN3-223ENST00000566472 FAM208AQ9UK61 1670 aaKnown RBP7.79□□□□□ -1.16
CLN3-223ENST00000566472 OVOS2A0A0G2JMS6 1433 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 MST1RQ04912 1400 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 NCOA3Q9Y6Q9 1424 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 HOXB7P09629 217 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 CCDC30Q5VVM6 783 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 CEP85Q6P2H3 762 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 HSCBQ8IWL3 235 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 ABTB2Q8N961 1025 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 IP6K1Q92551 441 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 STK31Q9BXU1 1019 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 C1orf115Q9H7X2 142 aa7.79□□□□□ -1.16
CLN3-223ENST00000566472 RGPD8O14715 1765 aaPredicted RBP7.79□□□□□ -1.16
CLN3-223ENST00000566472 SOX12O15370 315 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 SLC4A2P04920 1241 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 GSE1Q14687 1217 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 CHMP5Q9NZZ3 219 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 CEMIPQ8WUJ3 1361 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 PLEKHG2Q9H7P9 1386 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 KIF1AQ12756 1690 aa7.78□□□□□ -1.16
CLN3-223ENST00000566472 N4BP2Q86UW6 1770 aaPredicted RBP7.78□□□□□ -1.16
CLN3-223ENST00000566472 CAMTA1Q9Y6Y1 1673 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 FOXO3O43524 673 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 GNAI3P08754 354 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 TAF7Q15545 349 aaPredicted RBP7.77□□□□□ -1.17
CLN3-223ENST00000566472 KRT24Q2M2I5 525 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 TTC22Q5TAA0 569 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 PLEKHM2Q8IWE5 1019 aa7.77□□□□□ -1.17
CLN3-223ENST00000566472 CIZ1Q9ULV3 898 aaPredicted RBP7.77□□□□□ -1.17
CLN3-223ENST00000566472 GNAI2P04899 355 aa7.76□□□□□ -1.17
CLN3-223ENST00000566472 TRHP20396 242 aaPredicted RBP7.76□□□□□ -1.17
CLN3-223ENST00000566472 TBC1D9Q6ZT07 1266 aa7.76□□□□□ -1.17
CLN3-223ENST00000566472 MEIS3Q99687 375 aa7.76□□□□□ -1.17
CLN3-223ENST00000566472 ABCC6O95255 1503 aa7.76□□□□□ -1.17
CLN3-223ENST00000566472 LMO7Q8WWI1 1683 aa7.76□□□□□ -1.17
CLN3-223ENST00000566472 FRAT2O75474 233 aaPredicted RBP7.75□□□□□ -1.17
CLN3-223ENST00000566472 GSPT1P15170 499 aaKnown RBP7.75□□□□□ -1.17
CLN3-223ENST00000566472 FLIIQ13045 1269 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 AMOTQ4VCS5 1084 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 CASC1Q6TDU7 716 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 IL17REQ8NFR9 667 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 BCL11AQ9H165 835 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 OSBPL3Q9H4L5 887 aa7.75□□□□□ -1.17
CLN3-223ENST00000566472 LTN1O94822 1766 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 PTMSP20962 102 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 DDIT3P35638 169 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 PSME1Q06323 249 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 RABEP1Q15276 862 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 PLEKHO1Q53GL0 409 aaPredicted RBP7.74□□□□□ -1.17
CLN3-223ENST00000566472 AKAP4Q5JQC9 854 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 G2E3Q7L622 706 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 IL27Q8NEV9 243 aa7.74□□□□□ -1.17
CLN3-223ENST00000566472 SLKQ9H2G2 1235 aaPredicted RBP7.74□□□□□ -1.17
CLN3-223ENST00000566472 DCCP43146 1447 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms