RNA–Protein interactions for RNA: ENST00000565559.5

CAPN3-215, Transcript of calpain 3, humanhuman

TSL 3

Gene CAPN3, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-215ENST00000565559 KCNH5Q8NCM2 988 aa16.27■□□□□ 0.2
CAPN3-215ENST00000565559 PIP4P2Q8N4L2 257 aa16.26■□□□□ 0.19
CAPN3-215ENST00000565559 ABCC6O95255 1503 aa16.25■□□□□ 0.19
CAPN3-215ENST00000565559 FXR2P51116 673 aaKnown RBP eCLIP16.25■□□□□ 0.19
CAPN3-215ENST00000565559 ARHGEF25Q86VW2 580 aa16.25■□□□□ 0.19
CAPN3-215ENST00000565559 COL18A1P39060 1754 aa16.24■□□□□ 0.19
CAPN3-215ENST00000565559 COL24A1Q17RW2 1714 aa16.23■□□□□ 0.19
CAPN3-215ENST00000565559 TRPM1Q7Z4N2 1603 aa16.23■□□□□ 0.19
CAPN3-215ENST00000565559 QSER1Q2KHR3 1735 aa16.22■□□□□ 0.19
CAPN3-215ENST00000565559 SOX12O15370 315 aa16.22■□□□□ 0.19
CAPN3-215ENST00000565559 CD2APQ9Y5K6 639 aa16.22■□□□□ 0.19
CAPN3-215ENST00000565559 BTAF1O14981 1849 aa16.22■□□□□ 0.19
CAPN3-215ENST00000565559 KIF3CO14782 793 aa16.21■□□□□ 0.19
CAPN3-215ENST00000565559 IL2RBP14784 551 aa16.21■□□□□ 0.19
CAPN3-215ENST00000565559 PRELPP51888 382 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 COL13A1Q5TAT6 717 aaPredicted RBP16.2■□□□□ 0.18
CAPN3-215ENST00000565559 TNS4Q8IZW8 715 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 DNAJC5GQ8N7S2 189 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 CABP2Q9NPB3 220 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 NLRP2Q9NX02 1062 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 CABP1Q9NZU7 370 aa16.2■□□□□ 0.18
CAPN3-215ENST00000565559 CHADLQ6NUI6 762 aa16.19■□□□□ 0.18
CAPN3-215ENST00000565559 TOMM70O94826 608 aa16.17■□□□□ 0.18
CAPN3-215ENST00000565559 PIK3C2AO00443 1686 aa16.16■□□□□ 0.18
CAPN3-215ENST00000565559 PRKAR2AP13861 404 aaKnown RBP16.16■□□□□ 0.18
CAPN3-215ENST00000565559 KCNQ4P56696 695 aa16.16■□□□□ 0.18
CAPN3-215ENST00000565559 MSL1Q68DK7 614 aa16.16■□□□□ 0.18
CAPN3-215ENST00000565559 SYTL4Q96C24 671 aaPredicted RBP16.16■□□□□ 0.18
CAPN3-215ENST00000565559 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
CAPN3-215ENST00000565559 COL23A1Q86Y22 540 aaPredicted RBP16.15■□□□□ 0.18
CAPN3-215ENST00000565559 ERBB3P21860 1342 aa16.15■□□□□ 0.18
CAPN3-215ENST00000565559 CCNL1Q9UK58 526 aaPredicted RBP16.14■□□□□ 0.17
CAPN3-215ENST00000565559 QRICH2Q9H0J4 1663 aa16.14■□□□□ 0.17
CAPN3-215ENST00000565559 CENPJQ9HC77 1338 aaPredicted RBP16.14■□□□□ 0.17
CAPN3-215ENST00000565559 POTEHQ6S545 545 aa16.13■□□□□ 0.17
CAPN3-215ENST00000565559 DDX54Q8TDD1 881 aaKnown RBP16.13■□□□□ 0.17
CAPN3-215ENST00000565559 TTC21BQ7Z4L5 1316 aa16.13■□□□□ 0.17
CAPN3-215ENST00000565559 RGPD5Q99666 1765 aa16.13■□□□□ 0.17
CAPN3-215ENST00000565559 HMGB2P26583 209 aaKnown RBP16.12■□□□□ 0.17
CAPN3-215ENST00000565559 KLRG1Q96E93 195 aa16.12■□□□□ 0.17
CAPN3-215ENST00000565559 TTC21AQ8NDW8 1320 aa16.12■□□□□ 0.17
CAPN3-215ENST00000565559 KAT6BQ8WYB5 2073 aa16.12■□□□□ 0.17
CAPN3-215ENST00000565559 JMYQ8N9B5 988 aa16.11■□□□□ 0.17
CAPN3-215ENST00000565559 FLAD1Q8NFF5 587 aa16.11■□□□□ 0.17
CAPN3-215ENST00000565559 IGSF1Q8N6C5 1336 aa16.11■□□□□ 0.17
CAPN3-215ENST00000565559 TUBGCP6Q96RT7 1819 aa16.1■□□□□ 0.17
CAPN3-215ENST00000565559 NFAT5O94916 1531 aa16.1■□□□□ 0.17
CAPN3-215ENST00000565559 PRIM1P49642 420 aaKnown RBP16.1■□□□□ 0.17
CAPN3-215ENST00000565559 CREBZFQ9NS37 354 aa16.1■□□□□ 0.17
CAPN3-215ENST00000565559 WWC3Q9ULE0 1092 aa16.1■□□□□ 0.17
CAPN3-215ENST00000565559 ANKRD36BQ8N2N9 1353 aa16.1■□□□□ 0.17
CAPN3-215ENST00000565559 C16orf71Q8IYS4 520 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-215ENST00000565559 MIER1Q8N108 512 aa16.08■□□□□ 0.16
CAPN3-215ENST00000565559 ANKRD24Q8TF21 1146 aa16.08■□□□□ 0.16
CAPN3-215ENST00000565559 RBM46Q8TBY0 533 aaKnown RBP16.07■□□□□ 0.16
CAPN3-215ENST00000565559 USP47Q96K76 1375 aa16.07■□□□□ 0.16
CAPN3-215ENST00000565559 EVC2Q86UK5 1308 aa16.06■□□□□ 0.16
CAPN3-215ENST00000565559 WDR90Q96KV7 1748 aa16.05■□□□□ 0.16
CAPN3-215ENST00000565559 NBPF1Q3BBV0 1214 aa16.04■□□□□ 0.16
CAPN3-215ENST00000565559 NSD2O96028 1365 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 LY75O60449 1722 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 KIAA1210Q9ULL0 1709 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 SLC34A2O95436 690 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 HTRA3P83110 453 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 FSTL1Q12841 308 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 NMRK2Q9NPI5 230 aa16.03■□□□□ 0.16
CAPN3-215ENST00000565559 KTN1Q86UP2 1357 aaKnown RBP16.02■□□□□ 0.16
CAPN3-215ENST00000565559 PLCD3Q8N3E9 789 aa16.01■□□□□ 0.15
CAPN3-215ENST00000565559 CICQ96RK0 1608 aaPredicted RBP16.01■□□□□ 0.15
CAPN3-215ENST00000565559 USP31Q70CQ4 1352 aa16■□□□□ 0.15
CAPN3-215ENST00000565559 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.99■□□□□ 0.15
CAPN3-215ENST00000565559 AK7Q96M32 723 aa15.99■□□□□ 0.15
CAPN3-215ENST00000565559 DOT1LQ8TEK3 1739 aa15.99■□□□□ 0.15
CAPN3-215ENST00000565559 VASPP50552 380 aaPredicted RBP15.98■□□□□ 0.15
CAPN3-215ENST00000565559 ZCRB1Q8TBF4 217 aaKnown RBP15.98■□□□□ 0.15
CAPN3-215ENST00000565559 NSD3Q9BZ95 1437 aa15.98■□□□□ 0.15
CAPN3-215ENST00000565559 RAB3GAP2Q9H2M9 1393 aa15.98■□□□□ 0.15
CAPN3-215ENST00000565559 LTV1Q96GA3 475 aaPredicted RBP15.97■□□□□ 0.15
CAPN3-215ENST00000565559 PHF14O94880 888 aa15.96■□□□□ 0.15
CAPN3-215ENST00000565559 ARHGAP27Q6ZUM4 889 aa15.96■□□□□ 0.15
CAPN3-215ENST00000565559 BCS1LQ9Y276 419 aa15.96■□□□□ 0.15
CAPN3-215ENST00000565559 PLEKHG2Q9H7P9 1386 aa15.96■□□□□ 0.15
CAPN3-215ENST00000565559 KDM2BQ8NHM5 1336 aa15.95■□□□□ 0.14
CAPN3-215ENST00000565559 HSPA1AP0DMV8 641 aaKnown RBP15.95■□□□□ 0.14
CAPN3-215ENST00000565559 HSPA1BP0DMV9 641 aaKnown RBP15.95■□□□□ 0.14
CAPN3-215ENST00000565559 FARP1Q9Y4F1 1045 aaPredicted RBP15.95■□□□□ 0.14
CAPN3-215ENST00000565559 C5P01031 1676 aa15.95■□□□□ 0.14
CAPN3-215ENST00000565559 NME9Q86XW9 330 aa15.94■□□□□ 0.14
CAPN3-215ENST00000565559 IP6K1Q92551 441 aa15.94■□□□□ 0.14
CAPN3-215ENST00000565559 PALLDQ8WX93 1383 aa15.94■□□□□ 0.14
CAPN3-215ENST00000565559 LTN1O94822 1766 aa15.94■□□□□ 0.14
CAPN3-215ENST00000565559 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.93■□□□□ 0.14
CAPN3-215ENST00000565559 SMC1BQ8NDV3 1235 aa15.93■□□□□ 0.14
CAPN3-215ENST00000565559 SSFA2P28290 1259 aa15.92■□□□□ 0.14
CAPN3-215ENST00000565559 TGFB2P61812 414 aa15.92■□□□□ 0.14
CAPN3-215ENST00000565559 FAM208AQ9UK61 1670 aaKnown RBP15.92■□□□□ 0.14
CAPN3-215ENST00000565559 C9orf131Q5VYM1 1079 aa15.91■□□□□ 0.14
CAPN3-215ENST00000565559 SMARCC1Q92922 1105 aaPredicted RBP15.91■□□□□ 0.14
CAPN3-215ENST00000565559 USP54Q70EL1 1684 aa15.91■□□□□ 0.14
CAPN3-215ENST00000565559 PXDNLA1KZ92 1463 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms