RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 PKD1L3Q7Z443 1732 aa23.43■■□□□ 1.34
USB1-209ENST00000564387 SF3B2Q13435 895 aaKnown RBP23.43■■□□□ 1.34
USB1-209ENST00000564387 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.42■■□□□ 1.34
USB1-209ENST00000564387 KDRP35968 1356 aa23.41■■□□□ 1.34
USB1-209ENST00000564387 PPP2R1AP30153 589 aa23.41■■□□□ 1.34
USB1-209ENST00000564387 DEFB132Q7Z7B7 95 aa23.4■■□□□ 1.34
USB1-209ENST00000564387 BCL11BQ9C0K0 894 aaPredicted RBP23.4■■□□□ 1.34
USB1-209ENST00000564387 BAG6P46379 1132 aa23.39■■□□□ 1.33
USB1-209ENST00000564387 CNGB1Q14028 1251 aaPredicted RBP23.39■■□□□ 1.33
USB1-209ENST00000564387 DIAPH1O60610 1272 aaKnown RBP23.38■■□□□ 1.33
USB1-209ENST00000564387 DDX54Q8TDD1 881 aaKnown RBP23.38■■□□□ 1.33
USB1-209ENST00000564387 NHSQ6T4R5 1651 aa23.38■■□□□ 1.33
USB1-209ENST00000564387 PTF1AQ7RTS3 328 aa23.37■■□□□ 1.33
USB1-209ENST00000564387 PCDH11XQ9BZA7 1347 aa23.36■■□□□ 1.33
USB1-209ENST00000564387 PCDH11YQ9BZA8 1340 aa23.36■■□□□ 1.33
USB1-209ENST00000564387 ZNF316A6NFI3 1004 aaPredicted RBP23.36■■□□□ 1.33
USB1-209ENST00000564387 CYP27B1O15528 508 aa23.36■■□□□ 1.33
USB1-209ENST00000564387 CAMKK2Q96RR4 588 aa23.36■■□□□ 1.33
USB1-209ENST00000564387 APBA3O96018 575 aa23.35■■□□□ 1.33
USB1-209ENST00000564387 AEBP1Q8IUX7 1158 aa23.35■■□□□ 1.33
USB1-209ENST00000564387 SPG7Q9UQ90 795 aa23.35■■□□□ 1.33
USB1-209ENST00000564387 RGPD3A6NKT7 1758 aaPredicted RBP23.35■■□□□ 1.33
USB1-209ENST00000564387 RGPD4Q7Z3J3 1758 aa23.35■■□□□ 1.33
USB1-209ENST00000564387 PLSCR1O15162 318 aa23.34■■□□□ 1.33
USB1-209ENST00000564387 KCNQ2O43526 872 aa23.34■■□□□ 1.33
USB1-209ENST00000564387 EN1Q05925 392 aaPredicted RBP23.34■■□□□ 1.33
USB1-209ENST00000564387 NKX1-1Q15270 411 aaPredicted RBP23.34■■□□□ 1.33
USB1-209ENST00000564387 RALBP1Q15311 655 aa23.33■■□□□ 1.33
USB1-209ENST00000564387 SULT6B1Q6IMI4 303 aa23.33■■□□□ 1.33
USB1-209ENST00000564387 CFAP53Q96M91 514 aa23.31■■□□□ 1.32
USB1-209ENST00000564387 RREB1Q92766 1687 aa23.29■■□□□ 1.32
USB1-209ENST00000564387 EZH2Q15910 746 aaKnown RBP23.29■■□□□ 1.32
USB1-209ENST00000564387 AMOTQ4VCS5 1084 aa23.29■■□□□ 1.32
USB1-209ENST00000564387 DOT1LQ8TEK3 1739 aa23.29■■□□□ 1.32
USB1-209ENST00000564387 ACSBG1Q96GR2 724 aa23.29■■□□□ 1.32
USB1-209ENST00000564387 PHKG2P15735 406 aa23.28■■□□□ 1.32
USB1-209ENST00000564387 PLEKHO1Q53GL0 409 aaPredicted RBP23.28■■□□□ 1.32
USB1-209ENST00000564387 IFNL2Q8IZJ0 200 aa23.27■■□□□ 1.32
USB1-209ENST00000564387 BTAF1O14981 1849 aa23.26■■□□□ 1.31
USB1-209ENST00000564387 PRIM1P49642 420 aaKnown RBP23.26■■□□□ 1.31
USB1-209ENST00000564387 TOGARAM1Q9Y4F4 1720 aa23.25■■□□□ 1.31
USB1-209ENST00000564387 HMOX1P09601 288 aa23.25■■□□□ 1.31
USB1-209ENST00000564387 PROM2Q8N271 834 aa23.25■■□□□ 1.31
USB1-209ENST00000564387 PRKRIP1Q9H875 184 aaPredicted RBP23.23■■□□□ 1.31
USB1-209ENST00000564387 NUDCQ9Y266 331 aa23.23■■□□□ 1.31
USB1-209ENST00000564387 NUP188Q5SRE5 1749 aa23.22■■□□□ 1.31
USB1-209ENST00000564387 KAT6BQ8WYB5 2073 aa23.21■■□□□ 1.31
USB1-209ENST00000564387 U2SURPO15042 1029 aaKnown RBP23.21■■□□□ 1.31
USB1-209ENST00000564387 MYBBP1AQ9BQG0 1328 aaKnown RBP23.21■■□□□ 1.31
USB1-209ENST00000564387 HSP90AB1P08238 724 aaKnown RBP23.2■■□□□ 1.3
USB1-209ENST00000564387 ZNF530Q6P9A1 599 aaPredicted RBP23.2■■□□□ 1.3
USB1-209ENST00000564387 RSPH6AQ9H0K4 717 aa23.2■■□□□ 1.3
USB1-209ENST00000564387 ITGB4P16144 1822 aa23.19■■□□□ 1.3
USB1-209ENST00000564387 TXNRD1Q16881 649 aa23.19■■□□□ 1.3
USB1-209ENST00000564387 DCAF5Q96JK2 942 aa23.19■■□□□ 1.3
USB1-209ENST00000564387 FCHSD2O94868 740 aa23.18■■□□□ 1.3
USB1-209ENST00000564387 SYTL4Q96C24 671 aaPredicted RBP23.18■■□□□ 1.3
USB1-209ENST00000564387 KDM6AO15550 1401 aaPredicted RBP23.17■■□□□ 1.3
USB1-209ENST00000564387 ERVV-2B6SEH9 535 aa23.17■■□□□ 1.3
USB1-209ENST00000564387 AKAP4Q5JQC9 854 aa23.17■■□□□ 1.3
USB1-209ENST00000564387 LY75O60449 1722 aa23.16■■□□□ 1.3
USB1-209ENST00000564387 MTHFSDQ2M296 383 aaKnown RBP23.16■■□□□ 1.3
USB1-209ENST00000564387 U2AF1L5P0DN76 240 aaPredicted RBP23.15■■□□□ 1.3
USB1-209ENST00000564387 U2AF1Q01081 240 aaKnown RBP eCLIP23.15■■□□□ 1.3
USB1-209ENST00000564387 C1orf141Q5JVX7 400 aa23.15■■□□□ 1.3
USB1-209ENST00000564387 PIGBQ92521 554 aa23.15■■□□□ 1.3
USB1-209ENST00000564387 ADAMTS7Q9UKP4 1686 aa23.15■■□□□ 1.3
USB1-209ENST00000564387 PRKAR2BP31323 418 aa23.13■■□□□ 1.29
USB1-209ENST00000564387 SLC27A3Q5K4L6 730 aa23.13■■□□□ 1.29
USB1-209ENST00000564387 MPRIPQ6WCQ1 1025 aa23.13■■□□□ 1.29
USB1-209ENST00000564387 PAPPAQ13219 1627 aa23.12■■□□□ 1.29
USB1-209ENST00000564387 SCN11AQ9UI33 1791 aa23.12■■□□□ 1.29
USB1-209ENST00000564387 PHACTR3Q96KR7 559 aa23.12■■□□□ 1.29
USB1-209ENST00000564387 LRRC4BQ9NT99 713 aa23.12■■□□□ 1.29
USB1-209ENST00000564387 TMOD3Q9NYL9 352 aa23.11■■□□□ 1.29
USB1-209ENST00000564387 NBPF14Q5TI25 921 aa23.1■■□□□ 1.29
USB1-209ENST00000564387 GAS2L2Q8NHY3 880 aa23.1■■□□□ 1.29
USB1-209ENST00000564387 SMARCC1Q92922 1105 aaPredicted RBP23.09■■□□□ 1.29
USB1-209ENST00000564387 PLEKHF1Q96S99 279 aa23.09■■□□□ 1.29
USB1-209ENST00000564387 MRC1P22897 1456 aa23.09■■□□□ 1.29
USB1-209ENST00000564387 LGR6Q9HBX8 967 aa23.08■■□□□ 1.29
USB1-209ENST00000564387 ANO8Q9HCE9 1232 aaPredicted RBP23.08■■□□□ 1.29
USB1-209ENST00000564387 PALLDQ8WX93 1383 aa23.08■■□□□ 1.29
USB1-209ENST00000564387 RNMTO43148 476 aaKnown RBP23.07■■□□□ 1.28
USB1-209ENST00000564387 MAP3K5Q99683 1374 aa23.06■■□□□ 1.28
USB1-209ENST00000564387 R3HDM1Q15032 1099 aaKnown RBP23.06■■□□□ 1.28
USB1-209ENST00000564387 ATG3Q9NT62 314 aa23.06■■□□□ 1.28
USB1-209ENST00000564387 ASAP1Q9ULH1 1129 aa23.06■■□□□ 1.28
USB1-209ENST00000564387 GNAT3A8MTJ3 354 aa23.05■■□□□ 1.28
USB1-209ENST00000564387 CABP4P57796 275 aa23.05■■□□□ 1.28
USB1-209ENST00000564387 VIRMAQ69YN4 1812 aaKnown RBP23.05■■□□□ 1.28
USB1-209ENST00000564387 NFATC2IPQ8NCF5 419 aa23.04■■□□□ 1.28
USB1-209ENST00000564387 SLC52A2Q9HAB3 445 aa23.04■■□□□ 1.28
USB1-209ENST00000564387 ZNF831Q5JPB2 1677 aa23.03■■□□□ 1.28
USB1-209ENST00000564387 CEMIPQ8WUJ3 1361 aa23.03■■□□□ 1.28
USB1-209ENST00000564387 PSDA5PKW4 1024 aaPredicted RBP23.03■■□□□ 1.28
USB1-209ENST00000564387 SLC15A2Q16348 729 aa23.03■■□□□ 1.28
USB1-209ENST00000564387 IL17REQ8NFR9 667 aa23.03■■□□□ 1.28
USB1-209ENST00000564387 AKT1S1Q96B36 256 aa23.03■■□□□ 1.28
USB1-209ENST00000564387 PNNQ9H307 717 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms