RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 GAS2L2Q8NHY3 880 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 GOLGA6L3A6NEY3 463 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 AMPHP49418 695 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 AATKQ6ZMQ8 1374 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 TMEM2Q9UHN6 1383 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 NRXN3Q9Y4C0 1643 aa16.75■□□□□ 0.27
CLK3-215ENST00000564353 USHBP1Q8N6Y0 703 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 AMOTL2Q9Y2J4 779 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 CHL1O00533 1208 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 HDGFP51858 240 aaKnown RBP16.74■□□□□ 0.27
CLK3-215ENST00000564353 CEP85Q6P2H3 762 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 DLC1Q96QB1 1528 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 CDC42BPGQ6DT37 1551 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 A0A0U1RQG5 324 aaPredicted RBP16.74■□□□□ 0.27
CLK3-215ENST00000564353 CDC45O75419 566 aa16.74■□□□□ 0.27
CLK3-215ENST00000564353 RTF1Q92541 710 aaKnown RBP16.74■□□□□ 0.27
CLK3-215ENST00000564353 SSFA2P28290 1259 aa16.73■□□□□ 0.27
CLK3-215ENST00000564353 EXOC6BQ9Y2D4 811 aa16.73■□□□□ 0.27
CLK3-215ENST00000564353 DCTPP1Q9H773 170 aa16.73■□□□□ 0.27
CLK3-215ENST00000564353 PIK3R4Q99570 1358 aa16.72■□□□□ 0.27
CLK3-215ENST00000564353 CHMP4BQ9H444 224 aaKnown RBP16.72■□□□□ 0.27
CLK3-215ENST00000564353 SETD1AO15047 1707 aaKnown RBP16.71■□□□□ 0.27
CLK3-215ENST00000564353 CHAMP1Q96JM3 812 aa16.71■□□□□ 0.27
CLK3-215ENST00000564353 SDSP20132 328 aa16.71■□□□□ 0.27
CLK3-215ENST00000564353 NLRP6P59044 892 aa16.71■□□□□ 0.27
CLK3-215ENST00000564353 TTC22Q5TAA0 569 aa16.71■□□□□ 0.27
CLK3-215ENST00000564353 FOXD4L5Q5VV16 416 aaPredicted RBP16.71■□□□□ 0.27
CLK3-215ENST00000564353 INTS3Q68E01 1043 aaKnown RBP16.71■□□□□ 0.27
CLK3-215ENST00000564353 FOXD4L4Q8WXT5 416 aaPredicted RBP16.71■□□□□ 0.27
CLK3-215ENST00000564353 EYA1Q99502 592 aa16.71■□□□□ 0.27
CLK3-215ENST00000564353 K7ELQ4 463 aaPredicted RBP16.7■□□□□ 0.26
CLK3-215ENST00000564353 ANKRD44Q8N8A2 993 aa16.7■□□□□ 0.26
CLK3-215ENST00000564353 RRAGDQ9NQL2 400 aaPredicted RBP16.7■□□□□ 0.26
CLK3-215ENST00000564353 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
CLK3-215ENST00000564353 NOL8Q76FK4 1167 aaKnown RBP16.7■□□□□ 0.26
CLK3-215ENST00000564353 PKP1Q13835 747 aa16.69■□□□□ 0.26
CLK3-215ENST00000564353 SNX21Q969T3 373 aa16.69■□□□□ 0.26
CLK3-215ENST00000564353 RGS12O14924 1447 aa16.68■□□□□ 0.26
CLK3-215ENST00000564353 ADAMTS13Q76LX8 1427 aa16.68■□□□□ 0.26
CLK3-215ENST00000564353 RTL1A6NKG5 1358 aa16.68■□□□□ 0.26
CLK3-215ENST00000564353 DDIT3P35638 169 aa16.68■□□□□ 0.26
CLK3-215ENST00000564353 FKBP5Q13451 457 aaPredicted RBP16.68■□□□□ 0.26
CLK3-215ENST00000564353 L1TD1Q5T7N2 865 aaKnown RBP16.68■□□□□ 0.26
CLK3-215ENST00000564353 KNDC1Q76NI1 1749 aa16.68■□□□□ 0.26
CLK3-215ENST00000564353 USP6P35125 1406 aa16.67■□□□□ 0.26
CLK3-215ENST00000564353 PTPRUQ92729 1446 aa16.67■□□□□ 0.26
CLK3-215ENST00000564353 ATP10DQ9P241 1426 aa16.67■□□□□ 0.26
CLK3-215ENST00000564353 GLIPR1L2Q4G1C9 344 aa16.66■□□□□ 0.26
CLK3-215ENST00000564353 GAS2L3Q86XJ1 694 aa16.66■□□□□ 0.26
CLK3-215ENST00000564353 EID1Q9Y6B2 187 aa16.66■□□□□ 0.26
CLK3-215ENST00000564353 RIMS1Q86UR5 1692 aaKnown RBP16.66■□□□□ 0.26
CLK3-215ENST00000564353 PLEKHG3A1L390 1219 aa16.65■□□□□ 0.26
CLK3-215ENST00000564353 NCLP19338 710 aaKnown RBP16.65■□□□□ 0.26
CLK3-215ENST00000564353 RAB3GAP1Q15042 981 aa16.65■□□□□ 0.26
CLK3-215ENST00000564353 ZGPATQ8N5A5 531 aaKnown RBP16.65■□□□□ 0.26
CLK3-215ENST00000564353 UBR1Q8IWV7 1749 aa16.65■□□□□ 0.26
CLK3-215ENST00000564353 DDX11L8A8MPP1 907 aa16.65■□□□□ 0.26
CLK3-215ENST00000564353 USP26Q9BXU7 913 aa16.65■□□□□ 0.26
CLK3-215ENST00000564353 PNMA6EA0A0J9YXQ4 647 aa16.64■□□□□ 0.25
CLK3-215ENST00000564353 RPAP2Q8IXW5 612 aaPredicted RBP16.64■□□□□ 0.25
CLK3-215ENST00000564353 OVOS2A0A0J9YW53 1432 aa16.64■□□□□ 0.25
CLK3-215ENST00000564353 OVOS2Q6IE36 1432 aa16.64■□□□□ 0.25
CLK3-215ENST00000564353 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.64■□□□□ 0.25
CLK3-215ENST00000564353 MAP4K4O95819 1239 aaPredicted RBP16.64■□□□□ 0.25
CLK3-215ENST00000564353 EIF2S2P20042 333 aaKnown RBP16.64■□□□□ 0.25
CLK3-215ENST00000564353 CRB1P82279 1406 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 ABTB2Q8N961 1025 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 RILPL2Q969X0 211 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 STK31Q9BXU1 1019 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 FSD2A1L4K1 749 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 ANXA1P04083 346 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 GBP4Q96PP9 640 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 IL1RAPL2Q9NP60 686 aa16.63■□□□□ 0.25
CLK3-215ENST00000564353 FOXD4L6Q3SYB3 417 aaPredicted RBP16.62■□□□□ 0.25
CLK3-215ENST00000564353 TPRNQ4KMQ1 711 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 FOXD4L3Q6VB84 417 aaPredicted RBP16.62■□□□□ 0.25
CLK3-215ENST00000564353 NCOA3Q9Y6Q9 1424 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 PEAK1Q9H792 1746 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 TRIM6-TRIM34B2RNG4 842 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 KCNA6P17658 529 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 MCTP1Q6DN14 999 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 GRPEL1Q9HAV7 217 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 C3P01024 1663 aa16.62■□□□□ 0.25
CLK3-215ENST00000564353 FLIIQ13045 1269 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 SIRT1Q96EB6 747 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 PHAXQ9H814 394 aaKnown RBP16.61■□□□□ 0.25
CLK3-215ENST00000564353 TECPR2O15040 1411 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 DTNBO60941 627 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 FAM43AQ8N2R8 423 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 PTPRCP08575 1304 aa16.61■□□□□ 0.25
CLK3-215ENST00000564353 XPCQ01831 940 aaPredicted RBP16.6■□□□□ 0.25
CLK3-215ENST00000564353 CEP170BQ9Y4F5 1589 aaPredicted RBP16.6■□□□□ 0.25
CLK3-215ENST00000564353 IL17REQ8NFR9 667 aa16.6■□□□□ 0.25
CLK3-215ENST00000564353 LRRFIP2Q9Y608 721 aaKnown RBP16.6■□□□□ 0.25
CLK3-215ENST00000564353 MON2Q7Z3U7 1717 aa16.6■□□□□ 0.25
CLK3-215ENST00000564353 PLEKHG1Q9ULL1 1385 aa16.6■□□□□ 0.25
CLK3-215ENST00000564353 PDE1AP54750 535 aa16.6■□□□□ 0.25
CLK3-215ENST00000564353 GNAI2P04899 355 aa16.59■□□□□ 0.25
CLK3-215ENST00000564353 DDX49Q9Y6V7 483 aaKnown RBP16.59■□□□□ 0.25
CLK3-215ENST00000564353 ITSN1Q15811 1721 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms