RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	IGHD	P01880	384 aa		13.89	□□□□□ -0.19
TCF4-222	ENST00000564228	CCDC146	Q8IYE0	955 aa		13.89	□□□□□ -0.19
TCF4-222	ENST00000564228	MAP7D2	Q96T17	732 aa		13.89	□□□□□ -0.19
TCF4-222	ENST00000564228	ERBB4	Q15303	1308 aa		13.89	□□□□□ -0.19
TCF4-222	ENST00000564228	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	TRIM44	Q96DX7	344 aa	Predicted RBP	13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	NFAT5	O94916	1531 aa		13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	ZBTB7C	A1YPR0	619 aa		13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	AMPH	P49418	695 aa		13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	NGEF	Q8N5V2	710 aa		13.88	□□□□□ -0.19
TCF4-222	ENST00000564228	SLIT3	O75094	1523 aa		13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	PTMS	P20962	102 aa		13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	KCNH5	Q8NCM2	988 aa		13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	CLUAP1	Q96AJ1	413 aa		13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	SPATA31A3	Q5VYP0	1347 aa		13.87	□□□□□ -0.19
TCF4-222	ENST00000564228	HSP90AB2P	Q58FF8	381 aa		13.86	□□□□□ -0.19
TCF4-222	ENST00000564228	SOS2	Q07890	1332 aa	Predicted RBP	13.86	□□□□□ -0.19
TCF4-222	ENST00000564228	MED1	Q15648	1581 aa	Predicted RBP	13.86	□□□□□ -0.19
TCF4-222	ENST00000564228	GC	P02774	474 aa		13.86	□□□□□ -0.19
TCF4-222	ENST00000564228	FLT4	P35916	1363 aa		13.86	□□□□□ -0.19
TCF4-222	ENST00000564228	ARHGEF10	O15013	1369 aa		13.85	□□□□□ -0.19
TCF4-222	ENST00000564228	GZF1	Q9H116	711 aa	Predicted RBP	13.85	□□□□□ -0.19
TCF4-222	ENST00000564228	CRYBG1	Q9Y4K1	1723 aa		13.85	□□□□□ -0.19
TCF4-222	ENST00000564228	RGPD5	Q99666	1765 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	TOM1	O60784	492 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	PIP4K2B	P78356	416 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	CABLES1	Q8TDN4	633 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	ARX	Q96QS3	562 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	PRDM4	Q9UKN5	801 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228		E9PSI1	815 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	IL13	P35225	146 aa		13.84	□□□□□ -0.19
TCF4-222	ENST00000564228	PHLPP1	O60346	1717 aa		13.83	□□□□□ -0.2
TCF4-222	ENST00000564228	ATXN8OS	P0DMR3	200 aa		13.83	□□□□□ -0.2
TCF4-222	ENST00000564228	HOXC9	P31274	260 aa		13.83	□□□□□ -0.2
TCF4-222	ENST00000564228	EIF4A2	Q14240	407 aa	Known RBP	13.83	□□□□□ -0.2
TCF4-222	ENST00000564228	OFD1	O75665	1012 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	HMOX1	P09601	288 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	ZC3H6	P61129	1189 aa	Known RBP	13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	CCDC173	Q0VFZ6	552 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	KIAA1211	Q6ZU35	1233 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	UBAP1L	F5GYI3	381 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	APAF1	O14727	1248 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	PPP1R9B	Q96SB3	815 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	ABCA3	Q99758	1704 aa		13.82	□□□□□ -0.2
TCF4-222	ENST00000564228	RTL1	A6NKG5	1358 aa		13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	KIF24	Q5T7B8	1368 aa		13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	RUNDC1	Q96C34	613 aa		13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	LTV1	Q96GA3	475 aa	Predicted RBP	13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	RGPD2	P0DJD1	1756 aa		13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	RGPD1	P0DJD0	1748 aa		13.81	□□□□□ -0.2
TCF4-222	ENST00000564228	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.8	□□□□□ -0.2
TCF4-222	ENST00000564228	BCAR3	O75815	825 aa		13.8	□□□□□ -0.2
TCF4-222	ENST00000564228	DDIT3	P35638	169 aa		13.8	□□□□□ -0.2
TCF4-222	ENST00000564228	ARHGEF25	Q86VW2	580 aa		13.8	□□□□□ -0.2
TCF4-222	ENST00000564228	ZSCAN30	Q86W11	494 aa		13.8	□□□□□ -0.2
TCF4-222	ENST00000564228	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.79	□□□□□ -0.2
TCF4-222	ENST00000564228	MTERF4	Q7Z6M4	381 aa	Known RBP	13.79	□□□□□ -0.2
TCF4-222	ENST00000564228	CERK	Q8TCT0	537 aa		13.79	□□□□□ -0.2
TCF4-222	ENST00000564228	IP6K1	Q92551	441 aa		13.79	□□□□□ -0.2
TCF4-222	ENST00000564228	SLC4A2	P04920	1241 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	PRKAR2B	P31323	418 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	NEUROD2	Q15784	382 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	RRP7A	Q9Y3A4	280 aa	Known RBP	13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	IQSEC2	Q5JU85	1478 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	FCHSD2	O94868	740 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	TCP11L2	Q8N4U5	519 aa		13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	LRRC59	Q96AG4	307 aa	Known RBP	13.78	□□□□□ -0.2
TCF4-222	ENST00000564228	HS1BP3	Q53T59	392 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	SULT6B1	Q6IMI4	303 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	HSCB	Q8IWL3	235 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	GBP4	Q96PP9	640 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	PLEKHF1	Q96S99	279 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	RNF216	Q9NWF9	866 aa	Predicted RBP	13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	COL16A1	Q07092	1604 aa	Predicted RBP	13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	DLG5	Q8TDM6	1919 aa		13.77	□□□□□ -0.21
TCF4-222	ENST00000564228	COL18A1	P39060	1754 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	AEBP1	Q8IUX7	1158 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	C22orf23	Q9BZE7	217 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	KIAA0232	Q92628	1395 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	CHRNA2	Q15822	529 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	EYA1	Q99502	592 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	PDZRN3	Q9UPQ7	1066 aa		13.76	□□□□□ -0.21
TCF4-222	ENST00000564228	RIPK4	P57078	832 aa		13.75	□□□□□ -0.21
TCF4-222	ENST00000564228	SNX21	Q969T3	373 aa		13.75	□□□□□ -0.21
TCF4-222	ENST00000564228	AXIN2	Q9Y2T1	843 aa		13.75	□□□□□ -0.21
TCF4-222	ENST00000564228	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	SMC5	Q8IY18	1101 aa		13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	IGSF1	Q8N6C5	1336 aa		13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	CANX	P27824	592 aa	Known RBP	13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	GAS2L3	Q86XJ1	694 aa		13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	RWDD1	Q9H446	243 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	COG6	Q9Y2V7	657 aa		13.74	□□□□□ -0.21
TCF4-222	ENST00000564228	MSN	P26038	577 aa	Known RBP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms